miRNA display CGI


Results 1 - 20 of 376 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31024 5' -65.1 NC_006560.1 + 112 0.66 0.557732
Target:  5'- cGCGGCCG-CGGCCgGcgcggguuugggcGGGGCcgGCccCGCc -3'
miRNA:   3'- -CGCUGGCaGCCGGgC-------------CCCCG--CGa-GCG- -5'
31024 5' -65.1 NC_006560.1 + 533 0.68 0.45123
Target:  5'- gGCGGCCGgccgCGcCCCGGGuccccGGCGUcccccgCGCg -3'
miRNA:   3'- -CGCUGGCa---GCcGGGCCC-----CCGCGa-----GCG- -5'
31024 5' -65.1 NC_006560.1 + 971 0.71 0.300998
Target:  5'- -aGGCCugcacGCCCGGGGGCGCgccccUCGCc -3'
miRNA:   3'- cgCUGGcagc-CGGGCCCCCGCG-----AGCG- -5'
31024 5' -65.1 NC_006560.1 + 1516 0.66 0.549368
Target:  5'- cGCGugCaUCGGgCCccGGGCGCgCGCc -3'
miRNA:   3'- -CGCugGcAGCCgGGccCCCGCGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 2046 0.67 0.477113
Target:  5'- cGCGGCCGgCGGCCCa---GCGCaCGCg -3'
miRNA:   3'- -CGCUGGCaGCCGGGccccCGCGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 2074 0.7 0.320864
Target:  5'- cGCGGCgGcggGGUCCGGGGGCccgGCgucggCGCg -3'
miRNA:   3'- -CGCUGgCag-CCGGGCCCCCG---CGa----GCG- -5'
31024 5' -65.1 NC_006560.1 + 2122 0.7 0.320864
Target:  5'- cGCGGCguCGgggucCGGCUCGGgcaGGGCGCgcgCGCa -3'
miRNA:   3'- -CGCUG--GCa----GCCGGGCC---CCCGCGa--GCG- -5'
31024 5' -65.1 NC_006560.1 + 2173 0.69 0.378539
Target:  5'- cGCGGCgGgcagGGCCuCGGGcccGGCGCgCGCg -3'
miRNA:   3'- -CGCUGgCag--CCGG-GCCC---CCGCGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 2349 0.75 0.148605
Target:  5'- cGCGGCCGUCGaGCgCGGGcagcacGGCGCggcgguacUCGCg -3'
miRNA:   3'- -CGCUGGCAGC-CGgGCCC------CCGCG--------AGCG- -5'
31024 5' -65.1 NC_006560.1 + 2468 0.66 0.530928
Target:  5'- cGCGGCgG-CGGCgcgUCGGGguagaGGCGCgCGCa -3'
miRNA:   3'- -CGCUGgCaGCCG---GGCCC-----CCGCGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 2541 0.67 0.468402
Target:  5'- cGCGGCCGgaggCGaGCaCGGcGcGGCGCaggUCGCg -3'
miRNA:   3'- -CGCUGGCa---GC-CGgGCC-C-CCGCG---AGCG- -5'
31024 5' -65.1 NC_006560.1 + 3071 0.73 0.201503
Target:  5'- cGCGGCCGgagccCGGCUCGGGcGG-GC-CGCa -3'
miRNA:   3'- -CGCUGGCa----GCCGGGCCC-CCgCGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 3241 0.76 0.128724
Target:  5'- gGCGugUGggcgGGCCCGGGcGGCGCgcggCGCc -3'
miRNA:   3'- -CGCugGCag--CCGGGCCC-CCGCGa---GCG- -5'
31024 5' -65.1 NC_006560.1 + 3316 0.79 0.08502
Target:  5'- aGCG-CCG-CGGgCCGGGGGCGCggGCg -3'
miRNA:   3'- -CGCuGGCaGCCgGGCCCCCGCGagCG- -5'
31024 5' -65.1 NC_006560.1 + 3426 0.66 0.530012
Target:  5'- gGCGGCgGgcgCGGgcgcCCgCGGGGGCgaggagcucuugcGCUUGCg -3'
miRNA:   3'- -CGCUGgCa--GCC----GG-GCCCCCG-------------CGAGCG- -5'
31024 5' -65.1 NC_006560.1 + 3483 0.69 0.373979
Target:  5'- gGCGGCgucggCGUCGGCgUcggcggcguccagcaGGGGGCGCagGCu -3'
miRNA:   3'- -CGCUG-----GCAGCCGgG---------------CCCCCGCGagCG- -5'
31024 5' -65.1 NC_006560.1 + 3651 0.7 0.348852
Target:  5'- gGCGGCC-UCGGCgCCGccGGGGaCGCggaggUCGCc -3'
miRNA:   3'- -CGCUGGcAGCCG-GGC--CCCC-GCG-----AGCG- -5'
31024 5' -65.1 NC_006560.1 + 3745 0.69 0.378539
Target:  5'- cGCGGgCG-CGGCgCGGGcgcggcGGCGC-CGCg -3'
miRNA:   3'- -CGCUgGCaGCCGgGCCC------CCGCGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 3795 0.72 0.236304
Target:  5'- cGCGGCCGcCaGCCCGGGcacggcGGCGaggUCGCc -3'
miRNA:   3'- -CGCUGGCaGcCGGGCCC------CCGCg--AGCG- -5'
31024 5' -65.1 NC_006560.1 + 3906 0.66 0.525439
Target:  5'- gGCGG-CGUCGgcgucccccuccuccGCCgCGGGGGCGg-CGCc -3'
miRNA:   3'- -CGCUgGCAGC---------------CGG-GCCCCCGCgaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.