miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31025 3' -52.3 NC_006560.1 + 107155 1.12 0.00424
Target:  5'- cUGUUUCUGACGUACCUCACCGAGGCCu -3'
miRNA:   3'- -ACAAAGACUGCAUGGAGUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 51092 0.78 0.523921
Target:  5'- ----cCUGACGUACgUCgccACCGGGGCCc -3'
miRNA:   3'- acaaaGACUGCAUGgAG---UGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 80545 0.78 0.523921
Target:  5'- ----gCUGGCGguCCUCAUCGAGGCCu -3'
miRNA:   3'- acaaaGACUGCauGGAGUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 70448 0.76 0.626785
Target:  5'- ----cCUGGCGgGCCugcgggccgcgaUCGCCGAGGCCa -3'
miRNA:   3'- acaaaGACUGCaUGG------------AGUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 59740 0.75 0.647651
Target:  5'- ------cGGCGUugUUUACCGGGGCCg -3'
miRNA:   3'- acaaagaCUGCAugGAGUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 91498 0.75 0.668466
Target:  5'- aGUUcCgcGACG-GCCUgACCGAGGCCa -3'
miRNA:   3'- aCAAaGa-CUGCaUGGAgUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 118681 0.74 0.709654
Target:  5'- cGgcUCUcgGGCG-AgCUCGCCGAGGCCc -3'
miRNA:   3'- aCaaAGA--CUGCaUgGAGUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 51589 0.73 0.739859
Target:  5'- cGgugCUGGCcUGCCUCGCCGccgcGGCCu -3'
miRNA:   3'- aCaaaGACUGcAUGGAGUGGCu---CCGG- -5'
31025 3' -52.3 NC_006560.1 + 104030 0.73 0.756602
Target:  5'- -----gUGACGaugagcacgccguaUGCCgUCACCGAGGCCg -3'
miRNA:   3'- acaaagACUGC--------------AUGG-AGUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 36995 0.72 0.832737
Target:  5'- cGUcgUCgcccGACGccgcgGCCUCGCCG-GGCCu -3'
miRNA:   3'- aCAa-AGa---CUGCa----UGGAGUGGCuCCGG- -5'
31025 3' -52.3 NC_006560.1 + 71587 0.71 0.860438
Target:  5'- gGUcUUC-GACGcggGCCUCcgcgaugcccugucgGCCGAGGCCg -3'
miRNA:   3'- aCA-AAGaCUGCa--UGGAG---------------UGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 111604 0.7 0.879966
Target:  5'- ----cCUGACGcugGCCgaCACgGAGGCCg -3'
miRNA:   3'- acaaaGACUGCa--UGGa-GUGgCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 130235 0.7 0.887069
Target:  5'- -----gUGGCGcGCUUCGCCGAGGUg -3'
miRNA:   3'- acaaagACUGCaUGGAGUGGCUCCGg -5'
31025 3' -52.3 NC_006560.1 + 109160 0.7 0.900569
Target:  5'- ----cUUGGCG-AUCUCGCCG-GGCCg -3'
miRNA:   3'- acaaaGACUGCaUGGAGUGGCuCCGG- -5'
31025 3' -52.3 NC_006560.1 + 116331 0.69 0.919002
Target:  5'- ------aGACG-ACCUcCugCGAGGCCa -3'
miRNA:   3'- acaaagaCUGCaUGGA-GugGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 127836 0.69 0.919002
Target:  5'- ----gCUGGCGgcgcGCUUCGCCGcgucAGGCCu -3'
miRNA:   3'- acaaaGACUGCa---UGGAGUGGC----UCCGG- -5'
31025 3' -52.3 NC_006560.1 + 23704 0.69 0.921292
Target:  5'- ----cCUGcGCGgcgACCUCcgcguccccggcggcGCCGAGGCCg -3'
miRNA:   3'- acaaaGAC-UGCa--UGGAG---------------UGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 44704 0.69 0.924653
Target:  5'- aGUcggCcGACGUGCUcgUCGCCcAGGCCa -3'
miRNA:   3'- aCAaa-GaCUGCAUGG--AGUGGcUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 20014 0.69 0.924653
Target:  5'- cGUccggGugGUGCCcCuCCGAGGCCc -3'
miRNA:   3'- aCAaagaCugCAUGGaGuGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 132203 0.69 0.924653
Target:  5'- ------gGACGU-CCUgGCCGAGGCg -3'
miRNA:   3'- acaaagaCUGCAuGGAgUGGCUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.