miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31025 3' -52.3 NC_006560.1 + 5338 0.68 0.944774
Target:  5'- cGggUCcGGCGU-CCUCGgCG-GGCCg -3'
miRNA:   3'- aCaaAGaCUGCAuGGAGUgGCuCCGG- -5'
31025 3' -52.3 NC_006560.1 + 13253 0.69 0.930055
Target:  5'- gGUUgcgGACGggGCaCUCGCCcaGGGGCCg -3'
miRNA:   3'- aCAAagaCUGCa-UG-GAGUGG--CUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 20014 0.69 0.924653
Target:  5'- cGUccggGugGUGCCcCuCCGAGGCCc -3'
miRNA:   3'- aCAaagaCugCAUGGaGuGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 22100 0.67 0.976216
Target:  5'- ------cGACGccgACCUCGCCGccGCCg -3'
miRNA:   3'- acaaagaCUGCa--UGGAGUGGCucCGG- -5'
31025 3' -52.3 NC_006560.1 + 23560 0.66 0.980879
Target:  5'- --cUUC-GGCGgcgACCUCGCCGccgugcccGGGCUg -3'
miRNA:   3'- acaAAGaCUGCa--UGGAGUGGC--------UCCGG- -5'
31025 3' -52.3 NC_006560.1 + 23704 0.69 0.921292
Target:  5'- ----cCUGcGCGgcgACCUCcgcguccccggcggcGCCGAGGCCg -3'
miRNA:   3'- acaaaGAC-UGCa--UGGAG---------------UGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 36101 0.68 0.944774
Target:  5'- ------cGGCGggGCCgcggcgggCACCGGGGCCg -3'
miRNA:   3'- acaaagaCUGCa-UGGa-------GUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 36995 0.72 0.832737
Target:  5'- cGUcgUCgcccGACGccgcgGCCUCGCCG-GGCCu -3'
miRNA:   3'- aCAa-AGa---CUGCa----UGGAGUGGCuCCGG- -5'
31025 3' -52.3 NC_006560.1 + 39406 0.68 0.957302
Target:  5'- gGgcUCgGGgGcGCCgcggCGCCGGGGCCg -3'
miRNA:   3'- aCaaAGaCUgCaUGGa---GUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 44704 0.69 0.924653
Target:  5'- aGUcggCcGACGUGCUcgUCGCCcAGGCCa -3'
miRNA:   3'- aCAaa-GaCUGCAUGG--AGUGGcUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 48704 0.67 0.973594
Target:  5'- aUGUUUCUGcaccUGUACCUCuuccucgcCCGggagguucucuGGGCCg -3'
miRNA:   3'- -ACAAAGACu---GCAUGGAGu-------GGC-----------UCCGG- -5'
31025 3' -52.3 NC_006560.1 + 50827 0.69 0.940114
Target:  5'- cUGUgc--GGCGagcGCCUgcaCGCCGAGGCCg -3'
miRNA:   3'- -ACAaagaCUGCa--UGGA---GUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 51092 0.78 0.523921
Target:  5'- ----cCUGACGUACgUCgccACCGGGGCCc -3'
miRNA:   3'- acaaaGACUGCAUGgAG---UGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 51589 0.73 0.739859
Target:  5'- cGgugCUGGCcUGCCUCGCCGccgcGGCCu -3'
miRNA:   3'- aCaaaGACUGcAUGGAGUGGCu---CCGG- -5'
31025 3' -52.3 NC_006560.1 + 52226 0.66 0.982937
Target:  5'- aGg--CUGGCGagcUGCCUgGCCccGGCCg -3'
miRNA:   3'- aCaaaGACUGC---AUGGAgUGGcuCCGG- -5'
31025 3' -52.3 NC_006560.1 + 55058 0.68 0.953365
Target:  5'- ---gUCUGG---GCgUCGCCGGGGCCc -3'
miRNA:   3'- acaaAGACUgcaUGgAGUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 59740 0.75 0.647651
Target:  5'- ------cGGCGUugUUUACCGGGGCCg -3'
miRNA:   3'- acaaagaCUGCAugGAGUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 60063 0.66 0.986546
Target:  5'- ------gGugG-ACUgCACCGAGGCCg -3'
miRNA:   3'- acaaagaCugCaUGGaGUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 60783 0.66 0.986546
Target:  5'- ------cGACGaagACCUgGCgGGGGCCg -3'
miRNA:   3'- acaaagaCUGCa--UGGAgUGgCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 62951 0.69 0.930055
Target:  5'- ----gCUGACGUcggcgaGCUgCGCCGAGGCg -3'
miRNA:   3'- acaaaGACUGCA------UGGaGUGGCUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.