Results 1 - 20 of 339 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31025 | 5' | -58.1 | NC_006560.1 | + | 246 | 0.68 | 0.767611 |
Target: 5'- uGCGGGCCCcaacugcgucucgGuGGAGGcCGGGUcgCGAGGCc -3' miRNA: 3'- -CGCCUGGG-------------C-CCUCUaGCUCG--GCUUCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 517 | 0.69 | 0.672548 |
Target: 5'- aCGGGCgCCGGGGGG-CGgcGGCCGGccGCg -3' miRNA: 3'- cGCCUG-GGCCCUCUaGC--UCGGCUu-CG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 976 | 0.73 | 0.459691 |
Target: 5'- uGCacGCCCGGGGGcgCGccccucgccccGGCCGggGCg -3' miRNA: 3'- -CGccUGGGCCCUCuaGC-----------UCGGCuuCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 1493 | 0.66 | 0.852331 |
Target: 5'- cGCGcGGCCCacgccggcGGGAGcgcgugcAUCGGGCCccgGGCg -3' miRNA: 3'- -CGC-CUGGG--------CCCUC-------UAGCUCGGcu-UCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 1866 | 0.66 | 0.845377 |
Target: 5'- cGCGGGC--GGGGGucgCGGGCgGggGUc -3' miRNA: 3'- -CGCCUGggCCCUCua-GCUCGgCuuCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 2528 | 0.7 | 0.612918 |
Target: 5'- cCGGGCCCGaagacgcggccGGAGG-CGAGCaCGgcGCg -3' miRNA: 3'- cGCCUGGGC-----------CCUCUaGCUCG-GCuuCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 3040 | 0.75 | 0.364565 |
Target: 5'- aGCGGGCCCGaGGcgcggagcggcccgAGggCGcGGCCGGAGCc -3' miRNA: 3'- -CGCCUGGGC-CC--------------UCuaGC-UCGGCUUCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 3249 | 0.76 | 0.34319 |
Target: 5'- gGCGGGCCCGGGcGGcgCGcggcgccAGCCGccGCg -3' miRNA: 3'- -CGCCUGGGCCC-UCuaGC-------UCGGCuuCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 3289 | 0.66 | 0.845377 |
Target: 5'- uCGGGCCCgccGGGcGggCGGGCgGuGAGCg -3' miRNA: 3'- cGCCUGGG---CCCuCuaGCUCGgC-UUCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 3321 | 0.75 | 0.390913 |
Target: 5'- cGCGGG-CCGGGGGcgCGGGCgGGcGGCg -3' miRNA: 3'- -CGCCUgGGCCCUCuaGCUCGgCU-UCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 3375 | 0.67 | 0.807623 |
Target: 5'- gGCGGGCgggCGGGcgGGcgCGGGCCGGcucuucuugcgcgccGGCg -3' miRNA: 3'- -CGCCUGg--GCCC--UCuaGCUCGGCU---------------UCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 3795 | 0.76 | 0.32202 |
Target: 5'- cGCGGccgccaGCCCGGGcacggcggcgAGGUCGccGCCGAAGCc -3' miRNA: 3'- -CGCC------UGGGCCC----------UCUAGCu-CGGCUUCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 4031 | 0.67 | 0.804179 |
Target: 5'- gGCGGcguCCCGGGgcggcGGcgCGGcGCCGGccgcGGCg -3' miRNA: 3'- -CGCCu--GGGCCC-----UCuaGCU-CGGCU----UCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 4767 | 0.68 | 0.768528 |
Target: 5'- gGCGGcgGCgCGGGguccGGGUcCGAGUCGggGUc -3' miRNA: 3'- -CGCC--UGgGCCC----UCUA-GCUCGGCuuCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 4825 | 0.69 | 0.682422 |
Target: 5'- cCGGGUCCGGGucgGGGUcCGAGUCGAcGGCg -3' miRNA: 3'- cGCCUGGGCCC---UCUA-GCUCGGCU-UCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 5090 | 0.69 | 0.682422 |
Target: 5'- uGCGGcgcgccGCCCGGGG--UCG-GCgGggGCg -3' miRNA: 3'- -CGCC------UGGGCCCUcuAGCuCGgCuuCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 5150 | 0.77 | 0.281364 |
Target: 5'- cGCgGGGCCCGGGccggggccgcgGGggCGGGCCGcGGCg -3' miRNA: 3'- -CG-CCUGGGCCC-----------UCuaGCUCGGCuUCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 5354 | 0.66 | 0.859878 |
Target: 5'- gGCGGGCCgucgucCGGGuccggCGAGCCcgcgccgccgagcGGAGCg -3' miRNA: 3'- -CGCCUGG------GCCCucua-GCUCGG-------------CUUCG- -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 6542 | 0.67 | 0.795467 |
Target: 5'- cGgGGGCUCGGGGGGaCGggGGCuCGggGg -3' miRNA: 3'- -CgCCUGGGCCCUCUaGC--UCG-GCuuCg -5' |
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31025 | 5' | -58.1 | NC_006560.1 | + | 6574 | 0.69 | 0.692257 |
Target: 5'- cGgGGGCUCGGGGGcUCGGGgggaCgGggGCu -3' miRNA: 3'- -CgCCUGGGCCCUCuAGCUC----GgCuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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