miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31025 5' -58.1 NC_006560.1 + 107189 1.13 0.001095
Target:  5'- gGCGGACCCGGGAGAUCGAGCCGAAGCg -3'
miRNA:   3'- -CGCCUGGGCCCUCUAGCUCGGCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 94493 0.84 0.10062
Target:  5'- aGCGGACCgCGGcGGGcgCGAGCCGcGAGCg -3'
miRNA:   3'- -CGCCUGG-GCC-CUCuaGCUCGGC-UUCG- -5'
31025 5' -58.1 NC_006560.1 + 76480 0.83 0.114331
Target:  5'- aGCuGGACCCGGGGGcgGUCGAcugGCUGGAGCa -3'
miRNA:   3'- -CG-CCUGGGCCCUC--UAGCU---CGGCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 108526 0.81 0.15852
Target:  5'- gGCGGGCCCGGGGG--CGcGUCGggGCg -3'
miRNA:   3'- -CGCCUGGGCCCUCuaGCuCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 35655 0.81 0.15852
Target:  5'- cGCGGAgguucCCCGGGAGGagGGGCCGcgGGGCg -3'
miRNA:   3'- -CGCCU-----GGGCCCUCUagCUCGGC--UUCG- -5'
31025 5' -58.1 NC_006560.1 + 36113 0.81 0.169873
Target:  5'- gGCGGGCaCCGGGgccgccgccgccgGGGUCGAGCCGGgcccgccGGCg -3'
miRNA:   3'- -CGCCUG-GGCCC-------------UCUAGCUCGGCU-------UCG- -5'
31025 5' -58.1 NC_006560.1 + 21015 0.79 0.20739
Target:  5'- gGCGGGCCCGccccGaAGggCGGGCCGggGCg -3'
miRNA:   3'- -CGCCUGGGCc---C-UCuaGCUCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 147939 0.79 0.212426
Target:  5'- cGCGGccCCCGGGAGG-CGGGCCcGGGCu -3'
miRNA:   3'- -CGCCu-GGGCCCUCUaGCUCGGcUUCG- -5'
31025 5' -58.1 NC_006560.1 + 15263 0.79 0.217567
Target:  5'- gGCGGACgCCGGGGGcgCGgucgcgggAGCCGgcGCg -3'
miRNA:   3'- -CGCCUG-GGCCCUCuaGC--------UCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 111365 0.78 0.239205
Target:  5'- cGCGuGGCCCGGGccacgcuGGUggcCGAGCUGAAGCg -3'
miRNA:   3'- -CGC-CUGGGCCCu------CUA---GCUCGGCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 131424 0.78 0.244315
Target:  5'- cUGGGCCCGGGccGUCGcggcgcuggcccuGGCCGAGGCg -3'
miRNA:   3'- cGCCUGGGCCCucUAGC-------------UCGGCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 130287 0.78 0.244888
Target:  5'- aCGGGCCCGGcGAGAucUCGGccGCCGgcGCg -3'
miRNA:   3'- cGCCUGGGCC-CUCU--AGCU--CGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 5150 0.77 0.281364
Target:  5'- cGCgGGGCCCGGGccggggccgcgGGggCGGGCCGcGGCg -3'
miRNA:   3'- -CG-CCUGGGCCC-----------UCuaGCUCGGCuUCG- -5'
31025 5' -58.1 NC_006560.1 + 32721 0.77 0.287847
Target:  5'- cGCGGGCCCGGGGuccGUCGGGggggCGggGCc -3'
miRNA:   3'- -CGCCUGGGCCCUc--UAGCUCg---GCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 122797 0.77 0.301163
Target:  5'- gGCGGGUCCGGGGGGUacggCGAGgUGGAGCu -3'
miRNA:   3'- -CGCCUGGGCCCUCUA----GCUCgGCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 142378 0.76 0.31495
Target:  5'- gGCGGcCuCCGGGAGGgcCGAGCCcGAGCc -3'
miRNA:   3'- -CGCCuG-GGCCCUCUa-GCUCGGcUUCG- -5'
31025 5' -58.1 NC_006560.1 + 121938 0.76 0.32202
Target:  5'- cGCGGGCCCGGGcGcgCGGcucugcGCCGgcGCc -3'
miRNA:   3'- -CGCCUGGGCCCuCuaGCU------CGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 3795 0.76 0.32202
Target:  5'- cGCGGccgccaGCCCGGGcacggcggcgAGGUCGccGCCGAAGCc -3'
miRNA:   3'- -CGCC------UGGGCCC----------UCUAGCu-CGGCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 77859 0.76 0.329208
Target:  5'- cGCGG-CgUGGGAGAcggGGGCCGggGCg -3'
miRNA:   3'- -CGCCuGgGCCCUCUag-CUCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 39404 0.76 0.329208
Target:  5'- uCGGGCUCGGGGGcgccgCGGcGCCGggGCc -3'
miRNA:   3'- cGCCUGGGCCCUCua---GCU-CGGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.