miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31025 5' -58.1 NC_006560.1 + 246 0.68 0.767611
Target:  5'- uGCGGGCCCcaacugcgucucgGuGGAGGcCGGGUcgCGAGGCc -3'
miRNA:   3'- -CGCCUGGG-------------C-CCUCUaGCUCG--GCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 517 0.69 0.672548
Target:  5'- aCGGGCgCCGGGGGG-CGgcGGCCGGccGCg -3'
miRNA:   3'- cGCCUG-GGCCCUCUaGC--UCGGCUu-CG- -5'
31025 5' -58.1 NC_006560.1 + 976 0.73 0.459691
Target:  5'- uGCacGCCCGGGGGcgCGccccucgccccGGCCGggGCg -3'
miRNA:   3'- -CGccUGGGCCCUCuaGC-----------UCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 1493 0.66 0.852331
Target:  5'- cGCGcGGCCCacgccggcGGGAGcgcgugcAUCGGGCCccgGGCg -3'
miRNA:   3'- -CGC-CUGGG--------CCCUC-------UAGCUCGGcu-UCG- -5'
31025 5' -58.1 NC_006560.1 + 1866 0.66 0.845377
Target:  5'- cGCGGGC--GGGGGucgCGGGCgGggGUc -3'
miRNA:   3'- -CGCCUGggCCCUCua-GCUCGgCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 2528 0.7 0.612918
Target:  5'- cCGGGCCCGaagacgcggccGGAGG-CGAGCaCGgcGCg -3'
miRNA:   3'- cGCCUGGGC-----------CCUCUaGCUCG-GCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 3040 0.75 0.364565
Target:  5'- aGCGGGCCCGaGGcgcggagcggcccgAGggCGcGGCCGGAGCc -3'
miRNA:   3'- -CGCCUGGGC-CC--------------UCuaGC-UCGGCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 3249 0.76 0.34319
Target:  5'- gGCGGGCCCGGGcGGcgCGcggcgccAGCCGccGCg -3'
miRNA:   3'- -CGCCUGGGCCC-UCuaGC-------UCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 3289 0.66 0.845377
Target:  5'- uCGGGCCCgccGGGcGggCGGGCgGuGAGCg -3'
miRNA:   3'- cGCCUGGG---CCCuCuaGCUCGgC-UUCG- -5'
31025 5' -58.1 NC_006560.1 + 3321 0.75 0.390913
Target:  5'- cGCGGG-CCGGGGGcgCGGGCgGGcGGCg -3'
miRNA:   3'- -CGCCUgGGCCCUCuaGCUCGgCU-UCG- -5'
31025 5' -58.1 NC_006560.1 + 3375 0.67 0.807623
Target:  5'- gGCGGGCgggCGGGcgGGcgCGGGCCGGcucuucuugcgcgccGGCg -3'
miRNA:   3'- -CGCCUGg--GCCC--UCuaGCUCGGCU---------------UCG- -5'
31025 5' -58.1 NC_006560.1 + 3795 0.76 0.32202
Target:  5'- cGCGGccgccaGCCCGGGcacggcggcgAGGUCGccGCCGAAGCc -3'
miRNA:   3'- -CGCC------UGGGCCC----------UCUAGCu-CGGCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 4031 0.67 0.804179
Target:  5'- gGCGGcguCCCGGGgcggcGGcgCGGcGCCGGccgcGGCg -3'
miRNA:   3'- -CGCCu--GGGCCC-----UCuaGCU-CGGCU----UCG- -5'
31025 5' -58.1 NC_006560.1 + 4767 0.68 0.768528
Target:  5'- gGCGGcgGCgCGGGguccGGGUcCGAGUCGggGUc -3'
miRNA:   3'- -CGCC--UGgGCCC----UCUA-GCUCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 4825 0.69 0.682422
Target:  5'- cCGGGUCCGGGucgGGGUcCGAGUCGAcGGCg -3'
miRNA:   3'- cGCCUGGGCCC---UCUA-GCUCGGCU-UCG- -5'
31025 5' -58.1 NC_006560.1 + 5090 0.69 0.682422
Target:  5'- uGCGGcgcgccGCCCGGGG--UCG-GCgGggGCg -3'
miRNA:   3'- -CGCC------UGGGCCCUcuAGCuCGgCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 5150 0.77 0.281364
Target:  5'- cGCgGGGCCCGGGccggggccgcgGGggCGGGCCGcGGCg -3'
miRNA:   3'- -CG-CCUGGGCCC-----------UCuaGCUCGGCuUCG- -5'
31025 5' -58.1 NC_006560.1 + 5354 0.66 0.859878
Target:  5'- gGCGGGCCgucgucCGGGuccggCGAGCCcgcgccgccgagcGGAGCg -3'
miRNA:   3'- -CGCCUGG------GCCCucua-GCUCGG-------------CUUCG- -5'
31025 5' -58.1 NC_006560.1 + 6542 0.67 0.795467
Target:  5'- cGgGGGCUCGGGGGGaCGggGGCuCGggGg -3'
miRNA:   3'- -CgCCUGGGCCCUCUaGC--UCG-GCuuCg -5'
31025 5' -58.1 NC_006560.1 + 6574 0.69 0.692257
Target:  5'- cGgGGGCUCGGGGGcUCGGGgggaCgGggGCu -3'
miRNA:   3'- -CgCCUGGGCCCUCuAGCUC----GgCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.