miRNA display CGI


Results 21 - 40 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31025 5' -58.1 NC_006560.1 + 6606 0.71 0.563524
Target:  5'- cGgGGGCUCGGGGGcUCGGGggaCCGggGg -3'
miRNA:   3'- -CgCCUGGGCCCUCuAGCUC---GGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 6655 0.71 0.602985
Target:  5'- cGgGGGCUCGGGGGcUCGGGgggaCCGggGg -3'
miRNA:   3'- -CgCCUGGGCCCUCuAGCUC----GGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 6705 0.71 0.602985
Target:  5'- cGgGGGCUCGGGGGcUCGGGgggaCCGggGg -3'
miRNA:   3'- -CgCCUGGGCCCUCuAGCUC----GGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 6747 0.71 0.602985
Target:  5'- cGgGGGCUCGGGGGcUCGGGgggaCCGggGg -3'
miRNA:   3'- -CgCCUGGGCCCUCuAGCUC----GGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 6780 0.71 0.602985
Target:  5'- cGgGGGCUCGGGGGcUCGGGgggaCCGggGg -3'
miRNA:   3'- -CgCCUGGGCCCUCuAGCUC----GGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 6813 0.66 0.853094
Target:  5'- cGgGGGCUCGGGGGGacCGGGgggaCCGggGg -3'
miRNA:   3'- -CgCCUGGGCCCUCUa-GCUC----GGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 9209 0.66 0.845377
Target:  5'- uGCGGuggaUCGGGGGG-CGAGgCGucGCg -3'
miRNA:   3'- -CGCCug--GGCCCUCUaGCUCgGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 9617 0.66 0.867955
Target:  5'- cGCGGcCCCuGGGGc-CGcGCCGAAGg -3'
miRNA:   3'- -CGCCuGGGcCCUCuaGCuCGGCUUCg -5'
31025 5' -58.1 NC_006560.1 + 9874 0.66 0.829399
Target:  5'- -gGGGCaCCGGGGGggCGGcacGCUGcgcGAGCa -3'
miRNA:   3'- cgCCUG-GGCCCUCuaGCU---CGGC---UUCG- -5'
31025 5' -58.1 NC_006560.1 + 10235 0.71 0.563524
Target:  5'- gGUGGGCggCGGGGGcgCGGGUCGcGGCg -3'
miRNA:   3'- -CGCCUGg-GCCCUCuaGCUCGGCuUCG- -5'
31025 5' -58.1 NC_006560.1 + 10485 0.67 0.81019
Target:  5'- -gGGGCCCGGGgcgggggccccgucGGGUCG-GCCGuaccacGCc -3'
miRNA:   3'- cgCCUGGGCCC--------------UCUAGCuCGGCuu----CG- -5'
31025 5' -58.1 NC_006560.1 + 11474 0.66 0.867955
Target:  5'- cGCGuGGCCgucagcucguacCGGGAGGccUCGGgcGCCGggGa -3'
miRNA:   3'- -CGC-CUGG------------GCCCUCU--AGCU--CGGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 11928 0.74 0.441882
Target:  5'- cGCGGGCCCGcaGGAGGggccggCGGGCC-AGGUc -3'
miRNA:   3'- -CGCCUGGGC--CCUCUa-----GCUCGGcUUCG- -5'
31025 5' -58.1 NC_006560.1 + 11979 0.66 0.860622
Target:  5'- gGCGGGgcUCUGGGuccugcGGGUCGAGCgGcacaGGGCg -3'
miRNA:   3'- -CGCCU--GGGCCC------UCUAGCUCGgC----UUCG- -5'
31025 5' -58.1 NC_006560.1 + 13037 0.68 0.731041
Target:  5'- gGCGGcagGCCgucgGGGGGAUgCGcAGCgGAAGCg -3'
miRNA:   3'- -CGCC---UGGg---CCCUCUA-GC-UCGgCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 14021 0.72 0.544041
Target:  5'- -aGGGCCCGGcggacGGGGUCGcGUCGggGUc -3'
miRNA:   3'- cgCCUGGGCC-----CUCUAGCuCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 14202 0.7 0.642769
Target:  5'- -aGGGCgUGGGGuGGUCGGG-CGggGCg -3'
miRNA:   3'- cgCCUGgGCCCU-CUAGCUCgGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 14281 0.66 0.845377
Target:  5'- gGCGGcguCgCCGGcGAGcgCGGcGCCGggGa -3'
miRNA:   3'- -CGCCu--G-GGCC-CUCuaGCU-CGGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 14787 0.7 0.632817
Target:  5'- gGCGGGCacgggcuccgUCGGGGGGcUCGggGGCCGGAGg -3'
miRNA:   3'- -CGCCUG----------GGCCCUCU-AGC--UCGGCUUCg -5'
31025 5' -58.1 NC_006560.1 + 14830 0.72 0.524783
Target:  5'- aGCGGACCCaggugcggcgggGGGAGcgUGgcGGCCG-GGCg -3'
miRNA:   3'- -CGCCUGGG------------CCCUCuaGC--UCGGCuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.