Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 517 | 0.68 | 0.475466 |
Target: 5'- aCGGgCGCcgggGGGCGGCgGCCGGC-CgCGc -3' miRNA: 3'- -GCCaGCG----CCCGCUGgCGGCCGaGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 610 | 0.69 | 0.432541 |
Target: 5'- gCGGgcaCGCGGGUucgaAUCGCaaGGCUCUCGg -3' miRNA: 3'- -GCCa--GCGCCCGc---UGGCGg-CCGAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 1862 | 0.71 | 0.298706 |
Target: 5'- gGGUCGCGGGCGGgggUCGCgGGCg---- -3' miRNA: 3'- gCCAGCGCCCGCU---GGCGgCCGagagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 1888 | 0.86 | 0.031846 |
Target: 5'- gGGUCGCGGGCGGCggCGCCGGCUaccagucCUCGg -3' miRNA: 3'- gCCAGCGCCCGCUG--GCGGCCGA-------GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 2915 | 0.75 | 0.172729 |
Target: 5'- gCGGUCcagGCGGGCGgggcgggggagacGCCGCCGaGCUcCUCGc -3' miRNA: 3'- -GCCAG---CGCCCGC-------------UGGCGGC-CGA-GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 3050 | 0.67 | 0.508553 |
Target: 5'- aGG-CGCGGagcggcccgagggcGCGGCCGgagcCCGGCUCgggCGg -3' miRNA: 3'- gCCaGCGCC--------------CGCUGGC----GGCCGAGa--GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 3327 | 0.69 | 0.407896 |
Target: 5'- cCGGgggCGCGGGCGGgcggCGUCGGCg-UCGg -3' miRNA: 3'- -GCCa--GCGCCCGCUg---GCGGCCGagAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 3376 | 0.71 | 0.332414 |
Target: 5'- gCGGgcggGCGGGCGGgCgcggGCCGGCUCUUc -3' miRNA: 3'- -GCCag--CGCCCGCUgG----CGGCCGAGAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 3430 | 0.7 | 0.361335 |
Target: 5'- gCGGgCGCGGGCGcCCGCgGgggcgaggaGCUCUUGc -3' miRNA: 3'- -GCCaGCGCCCGCuGGCGgC---------CGAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 3471 | 0.71 | 0.29229 |
Target: 5'- gCGGgccgCGCGGGCGG-CGUCGGCg-UCGg -3' miRNA: 3'- -GCCa---GCGCCCGCUgGCGGCCGagAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 3752 | 0.68 | 0.465836 |
Target: 5'- gCGG-CGCGGGCGcggcggcGCCGCgCGGCgggaccgCGg -3' miRNA: 3'- -GCCaGCGCCCGC-------UGGCG-GCCGaga----GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 3948 | 0.73 | 0.244819 |
Target: 5'- gCGGUCGgcggcgaGGGCGGCCGCCaGGCggcgCUgCGc -3' miRNA: 3'- -GCCAGCg------CCCGCUGGCGG-CCGa---GA-GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 4048 | 0.69 | 0.391962 |
Target: 5'- gCGG-CGCGGcGcCGGCCGCggCGGCguUCUCGc -3' miRNA: 3'- -GCCaGCGCC-C-GCUGGCG--GCCG--AGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 4437 | 0.78 | 0.11787 |
Target: 5'- aCGGgCGCGGGCGcGCCGgCGGC-CUCGu -3' miRNA: 3'- -GCCaGCGCCCGC-UGGCgGCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 4866 | 0.66 | 0.605829 |
Target: 5'- aGGuUCGCGucgacggcGGCGGCggCGCCGGCgggggccgcgucgcgCUCGg -3' miRNA: 3'- gCC-AGCGC--------CCGCUG--GCGGCCGa--------------GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 5508 | 0.72 | 0.285983 |
Target: 5'- gCGGUCGCGgcgagggucGGCGGCgGUCGcGCUCUUc -3' miRNA: 3'- -GCCAGCGC---------CCGCUGgCGGC-CGAGAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 5639 | 0.71 | 0.318604 |
Target: 5'- cCGG-CGaCGGGCGGCgcccgGCCGGCUC-CGc -3' miRNA: 3'- -GCCaGC-GCCCGCUGg----CGGCCGAGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 5671 | 0.7 | 0.368834 |
Target: 5'- cCGGggcgCGgGGGCGGCCGgCGGCgccgCccgUCGa -3' miRNA: 3'- -GCCa---GCgCCCGCUGGCgGCCGa---G---AGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 7642 | 0.68 | 0.440947 |
Target: 5'- cCGGcCGUcgGGGCGACCGUCGcccCUCUgGg -3' miRNA: 3'- -GCCaGCG--CCCGCUGGCGGCc--GAGAgC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 10253 | 0.77 | 0.12078 |
Target: 5'- gGGUCGC-GGCGGCC-CCGGC-CUCGg -3' miRNA: 3'- gCCAGCGcCCGCUGGcGGCCGaGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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