miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 106442 1.08 0.000729
Target:  5'- gCGGUCGCGGGCGACCGCCGGCUCUCGg -3'
miRNA:   3'- -GCCAGCGCCCGCUGGCGGCCGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 1888 0.86 0.031846
Target:  5'- gGGUCGCGGGCGGCggCGCCGGCUaccagucCUCGg -3'
miRNA:   3'- gCCAGCGCCCGCUG--GCGGCCGA-------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 118645 0.79 0.090814
Target:  5'- uCGGUgGCgugGGGCGGCCGCaacgcccccgcccccCGGCUCUCGg -3'
miRNA:   3'- -GCCAgCG---CCCGCUGGCG---------------GCCGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 103041 0.78 0.112246
Target:  5'- gCGGggCGCGGGCGgccgcucggggGCCGCCGGUUCcgCGg -3'
miRNA:   3'- -GCCa-GCGCCCGC-----------UGGCGGCCGAGa-GC- -5'
31026 3' -64.2 NC_006560.1 + 4437 0.78 0.11787
Target:  5'- aCGGgCGCGGGCGcGCCGgCGGC-CUCGu -3'
miRNA:   3'- -GCCaGCGCCCGC-UGGCgGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 10253 0.77 0.12078
Target:  5'- gGGUCGC-GGCGGCC-CCGGC-CUCGg -3'
miRNA:   3'- gCCAGCGcCCGCUGGcGGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 54663 0.77 0.129598
Target:  5'- gGGUCGCGGGgGcgcggcaGCCGCCGGCcgcgccCUCGu -3'
miRNA:   3'- gCCAGCGCCCgC-------UGGCGGCCGa-----GAGC- -5'
31026 3' -64.2 NC_006560.1 + 88197 0.76 0.139344
Target:  5'- aGGUCGCGGGgGgcgcggcagcccaGCCGCCGGUcgacCUCGg -3'
miRNA:   3'- gCCAGCGCCCgC-------------UGGCGGCCGa---GAGC- -5'
31026 3' -64.2 NC_006560.1 + 2915 0.75 0.172729
Target:  5'- gCGGUCcagGCGGGCGgggcgggggagacGCCGCCGaGCUcCUCGc -3'
miRNA:   3'- -GCCAG---CGCCCGC-------------UGGCGGC-CGA-GAGC- -5'
31026 3' -64.2 NC_006560.1 + 124452 0.75 0.177267
Target:  5'- gCGGUCucgGCGGGC-ACCucuuCCGGCUCUCGc -3'
miRNA:   3'- -GCCAG---CGCCCGcUGGc---GGCCGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 58250 0.75 0.177267
Target:  5'- gGGcCGcCGaGGCGAgCCGCCGGC-CUCGg -3'
miRNA:   3'- gCCaGC-GC-CCGCU-GGCGGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 69275 0.75 0.181485
Target:  5'- uGGcCGCGGGCGGCgGCCccGGC-CUCa -3'
miRNA:   3'- gCCaGCGCCCGCUGgCGG--CCGaGAGc -5'
31026 3' -64.2 NC_006560.1 + 17702 0.75 0.181485
Target:  5'- gGGUCGUGGGCGGCgGCCGGaaaacCGa -3'
miRNA:   3'- gCCAGCGCCCGCUGgCGGCCgaga-GC- -5'
31026 3' -64.2 NC_006560.1 + 118996 0.74 0.194675
Target:  5'- aGGUCGCGcGGCGcCUGCCGGUgcugCUgGa -3'
miRNA:   3'- gCCAGCGC-CCGCuGGCGGCCGa---GAgC- -5'
31026 3' -64.2 NC_006560.1 + 34672 0.74 0.212091
Target:  5'- gGGUCGCGGG-GAggaaccuaccugucCCGCCGGgCgUCUCGg -3'
miRNA:   3'- gCCAGCGCCCgCU--------------GGCGGCC-G-AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 39966 0.73 0.239357
Target:  5'- gCGG-CGCGGGCGGCUGCgUGuGCUCgccgCGa -3'
miRNA:   3'- -GCCaGCGCCCGCUGGCG-GC-CGAGa---GC- -5'
31026 3' -64.2 NC_006560.1 + 3948 0.73 0.244819
Target:  5'- gCGGUCGgcggcgaGGGCGGCCGCCaGGCggcgCUgCGc -3'
miRNA:   3'- -GCCAGCg------CCCGCUGGCGG-CCGa---GA-GC- -5'
31026 3' -64.2 NC_006560.1 + 55690 0.73 0.244819
Target:  5'- aGGUUGCGGGCGGgCGCCaGGC-C-CGc -3'
miRNA:   3'- gCCAGCGCCCGCUgGCGG-CCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 20968 0.73 0.250384
Target:  5'- cCGGcCGC-GGCG-CCGCCGGCUUuaugUCGg -3'
miRNA:   3'- -GCCaGCGcCCGCuGGCGGCCGAG----AGC- -5'
31026 3' -64.2 NC_006560.1 + 74941 0.73 0.250384
Target:  5'- aCGGUCGa-GGCGGCCGCCcgGGCccgcgacguUCUCGc -3'
miRNA:   3'- -GCCAGCgcCCGCUGGCGG--CCG---------AGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.