miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 517 0.68 0.475466
Target:  5'- aCGGgCGCcgggGGGCGGCgGCCGGC-CgCGc -3'
miRNA:   3'- -GCCaGCG----CCCGCUGgCGGCCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 610 0.69 0.432541
Target:  5'- gCGGgcaCGCGGGUucgaAUCGCaaGGCUCUCGg -3'
miRNA:   3'- -GCCa--GCGCCCGc---UGGCGg-CCGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 1862 0.71 0.298706
Target:  5'- gGGUCGCGGGCGGgggUCGCgGGCg---- -3'
miRNA:   3'- gCCAGCGCCCGCU---GGCGgCCGagagc -5'
31026 3' -64.2 NC_006560.1 + 1888 0.86 0.031846
Target:  5'- gGGUCGCGGGCGGCggCGCCGGCUaccagucCUCGg -3'
miRNA:   3'- gCCAGCGCCCGCUG--GCGGCCGA-------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 2915 0.75 0.172729
Target:  5'- gCGGUCcagGCGGGCGgggcgggggagacGCCGCCGaGCUcCUCGc -3'
miRNA:   3'- -GCCAG---CGCCCGC-------------UGGCGGC-CGA-GAGC- -5'
31026 3' -64.2 NC_006560.1 + 3050 0.67 0.508553
Target:  5'- aGG-CGCGGagcggcccgagggcGCGGCCGgagcCCGGCUCgggCGg -3'
miRNA:   3'- gCCaGCGCC--------------CGCUGGC----GGCCGAGa--GC- -5'
31026 3' -64.2 NC_006560.1 + 3327 0.69 0.407896
Target:  5'- cCGGgggCGCGGGCGGgcggCGUCGGCg-UCGg -3'
miRNA:   3'- -GCCa--GCGCCCGCUg---GCGGCCGagAGC- -5'
31026 3' -64.2 NC_006560.1 + 3376 0.71 0.332414
Target:  5'- gCGGgcggGCGGGCGGgCgcggGCCGGCUCUUc -3'
miRNA:   3'- -GCCag--CGCCCGCUgG----CGGCCGAGAGc -5'
31026 3' -64.2 NC_006560.1 + 3430 0.7 0.361335
Target:  5'- gCGGgCGCGGGCGcCCGCgGgggcgaggaGCUCUUGc -3'
miRNA:   3'- -GCCaGCGCCCGCuGGCGgC---------CGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 3471 0.71 0.29229
Target:  5'- gCGGgccgCGCGGGCGG-CGUCGGCg-UCGg -3'
miRNA:   3'- -GCCa---GCGCCCGCUgGCGGCCGagAGC- -5'
31026 3' -64.2 NC_006560.1 + 3752 0.68 0.465836
Target:  5'- gCGG-CGCGGGCGcggcggcGCCGCgCGGCgggaccgCGg -3'
miRNA:   3'- -GCCaGCGCCCGC-------UGGCG-GCCGaga----GC- -5'
31026 3' -64.2 NC_006560.1 + 3948 0.73 0.244819
Target:  5'- gCGGUCGgcggcgaGGGCGGCCGCCaGGCggcgCUgCGc -3'
miRNA:   3'- -GCCAGCg------CCCGCUGGCGG-CCGa---GA-GC- -5'
31026 3' -64.2 NC_006560.1 + 4048 0.69 0.391962
Target:  5'- gCGG-CGCGGcGcCGGCCGCggCGGCguUCUCGc -3'
miRNA:   3'- -GCCaGCGCC-C-GCUGGCG--GCCG--AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 4437 0.78 0.11787
Target:  5'- aCGGgCGCGGGCGcGCCGgCGGC-CUCGu -3'
miRNA:   3'- -GCCaGCGCCCGC-UGGCgGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 4866 0.66 0.605829
Target:  5'- aGGuUCGCGucgacggcGGCGGCggCGCCGGCgggggccgcgucgcgCUCGg -3'
miRNA:   3'- gCC-AGCGC--------CCGCUG--GCGGCCGa--------------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 5508 0.72 0.285983
Target:  5'- gCGGUCGCGgcgagggucGGCGGCgGUCGcGCUCUUc -3'
miRNA:   3'- -GCCAGCGC---------CCGCUGgCGGC-CGAGAGc -5'
31026 3' -64.2 NC_006560.1 + 5639 0.71 0.318604
Target:  5'- cCGG-CGaCGGGCGGCgcccgGCCGGCUC-CGc -3'
miRNA:   3'- -GCCaGC-GCCCGCUGg----CGGCCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 5671 0.7 0.368834
Target:  5'- cCGGggcgCGgGGGCGGCCGgCGGCgccgCccgUCGa -3'
miRNA:   3'- -GCCa---GCgCCCGCUGGCgGCCGa---G---AGC- -5'
31026 3' -64.2 NC_006560.1 + 7642 0.68 0.440947
Target:  5'- cCGGcCGUcgGGGCGACCGUCGcccCUCUgGg -3'
miRNA:   3'- -GCCaGCG--CCCGCUGGCGGCc--GAGAgC- -5'
31026 3' -64.2 NC_006560.1 + 10253 0.77 0.12078
Target:  5'- gGGUCGC-GGCGGCC-CCGGC-CUCGg -3'
miRNA:   3'- gCCAGCGcCCGCUGGcGGCCGaGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.