miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 11645 0.66 0.595346
Target:  5'- gCGGUCcggGCGGGCGGgggagUCGCUuccgggGGCUCggCGg -3'
miRNA:   3'- -GCCAG---CGCCCGCU-----GGCGG------CCGAGa-GC- -5'
31026 3' -64.2 NC_006560.1 + 12523 0.67 0.496812
Target:  5'- gCGGUCGCcgggucaguaGGGCGugUcCCGGCgccgcgccgucggggUCUCGu -3'
miRNA:   3'- -GCCAGCG----------CCCGCugGcGGCCG---------------AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 15136 0.68 0.466707
Target:  5'- uGGUCGCGGGCucugGGCCccccgcccCCGGCgUCUUc -3'
miRNA:   3'- gCCAGCGCCCG----CUGGc-------GGCCG-AGAGc -5'
31026 3' -64.2 NC_006560.1 + 15279 0.72 0.256053
Target:  5'- gCGGUCGCGGGagcCGGCgCGgCGGCgguggcCUCGg -3'
miRNA:   3'- -GCCAGCGCCC---GCUG-GCgGCCGa-----GAGC- -5'
31026 3' -64.2 NC_006560.1 + 17078 0.7 0.375673
Target:  5'- aGcUgGCGGGCGACCGCCgugaccugcgcgaGGCUCagGg -3'
miRNA:   3'- gCcAgCGCCCGCUGGCGG-------------CCGAGagC- -5'
31026 3' -64.2 NC_006560.1 + 17702 0.75 0.181485
Target:  5'- gGGUCGUGGGCGGCgGCCGGaaaacCGa -3'
miRNA:   3'- gCCAGCGCCCGCUGgCGGCCgaga-GC- -5'
31026 3' -64.2 NC_006560.1 + 18487 0.68 0.440947
Target:  5'- aGGUCGCGGacGCcGCCGCCuGCUUcCGc -3'
miRNA:   3'- gCCAGCGCC--CGcUGGCGGcCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 18828 0.66 0.604875
Target:  5'- gGGUgCGuCGGGCGGcuCCGCgaGGCcgcgUCUCGc -3'
miRNA:   3'- gCCA-GC-GCCCGCU--GGCGg-CCG----AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 20182 0.71 0.29229
Target:  5'- uCGGcUGgGGGCGACCgGCCcggGGCUCgUCGg -3'
miRNA:   3'- -GCCaGCgCCCGCUGG-CGG---CCGAG-AGC- -5'
31026 3' -64.2 NC_006560.1 + 20968 0.73 0.250384
Target:  5'- cCGGcCGC-GGCG-CCGCCGGCUUuaugUCGg -3'
miRNA:   3'- -GCCaGCGcCCGCuGGCGGCCGAG----AGC- -5'
31026 3' -64.2 NC_006560.1 + 21650 0.66 0.604875
Target:  5'- --cUCGaCGGGCGgcGCCGCCGGC-Cg-- -3'
miRNA:   3'- gccAGC-GCCCGC--UGGCGGCCGaGagc -5'
31026 3' -64.2 NC_006560.1 + 21689 0.66 0.604875
Target:  5'- --cUCGaCGGGCGgcGCCGCCGGC-Cg-- -3'
miRNA:   3'- gccAGC-GCCCGC--UGGCGGCCGaGagc -5'
31026 3' -64.2 NC_006560.1 + 21762 0.66 0.54723
Target:  5'- gGGUauaugagGCGGGCGGCCGUgcgaucguguagaCGGCagUCGc -3'
miRNA:   3'- gCCAg------CGCCCGCUGGCG-------------GCCGagAGC- -5'
31026 3' -64.2 NC_006560.1 + 22864 0.66 0.55752
Target:  5'- aCGG-CGgccUGGGCGacaGCCGCCcggGGCUCUgGg -3'
miRNA:   3'- -GCCaGC---GCCCGC---UGGCGG---CCGAGAgC- -5'
31026 3' -64.2 NC_006560.1 + 23388 0.68 0.487864
Target:  5'- aCGGcgcCGCGGGCGucgucgccgcgcagcGCCGCCuGGCggccgccCUCGc -3'
miRNA:   3'- -GCCa--GCGCCCGC---------------UGGCGG-CCGa------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 24593 0.66 0.595346
Target:  5'- uGGgcgCGCaGGGCGugCuCCuGCUCUCc -3'
miRNA:   3'- gCCa--GCG-CCCGCugGcGGcCGAGAGc -5'
31026 3' -64.2 NC_006560.1 + 25060 0.66 0.604875
Target:  5'- cCGcG-CGCGaGGCGgccGCCGCCGGCgcgCcCGa -3'
miRNA:   3'- -GC-CaGCGC-CCGC---UGGCGGCCGa--GaGC- -5'
31026 3' -64.2 NC_006560.1 + 26523 0.66 0.604875
Target:  5'- gGGcCGUGGGCGGgCGCgcgcggGGC-CUCGu -3'
miRNA:   3'- gCCaGCGCCCGCUgGCGg-----CCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 27644 0.66 0.595346
Target:  5'- cCGGgCGCGGggcGCGGCCGCCGcggaggucGUcCUCGc -3'
miRNA:   3'- -GCCaGCGCC---CGCUGGCGGC--------CGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 31142 0.69 0.424229
Target:  5'- cCGGcUCGCGGG-GACCcaaGCgGGC-CUCGc -3'
miRNA:   3'- -GCC-AGCGCCCgCUGG---CGgCCGaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.