miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 3' -56.1 NC_006560.1 + 55546 0.67 0.879191
Target:  5'- uCGggGACGcAGGCCGCCgUGCagaCGGCc -3'
miRNA:   3'- uGCagUUGU-UCUGGCGGgACGa--GCCG- -5'
31027 3' -56.1 NC_006560.1 + 80999 0.67 0.874895
Target:  5'- cAUGUCGGCGAGcgcccCCGCCUggccgcggaggaaguUGCgcaccgCGGCg -3'
miRNA:   3'- -UGCAGUUGUUCu----GGCGGG---------------ACGa-----GCCG- -5'
31027 3' -56.1 NC_006560.1 + 149189 0.67 0.871987
Target:  5'- --aUCAGCAuAGACCGCCaUGg-CGGCg -3'
miRNA:   3'- ugcAGUUGU-UCUGGCGGgACgaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 104052 0.67 0.871987
Target:  5'- cCGUCAcCGAGGCCGCCgUcGCgccucauaUCGGg -3'
miRNA:   3'- uGCAGUuGUUCUGGCGGgA-CG--------AGCCg -5'
31027 3' -56.1 NC_006560.1 + 41457 0.67 0.871987
Target:  5'- uGCGUCuccaGACAGGcgacgacCCGCCCcagcaGCUCGaGCg -3'
miRNA:   3'- -UGCAG----UUGUUCu------GGCGGGa----CGAGC-CG- -5'
31027 3' -56.1 NC_006560.1 + 3858 0.67 0.869784
Target:  5'- gACGgcgCGGC-AGACCGCCaggcacuccgcggcgGCgUCGGCg -3'
miRNA:   3'- -UGCa--GUUGuUCUGGCGGga-------------CG-AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 113506 0.67 0.864569
Target:  5'- uGCGccucuUCGACGGGGCgcuucacgccggCGUCCUGCUCauGGCc -3'
miRNA:   3'- -UGC-----AGUUGUUCUG------------GCGGGACGAG--CCG- -5'
31027 3' -56.1 NC_006560.1 + 103603 0.67 0.864569
Target:  5'- aGCGUCAGCAGcGaACCGCacaCCcGCgUGGCg -3'
miRNA:   3'- -UGCAGUUGUU-C-UGGCG---GGaCGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 78508 0.67 0.864569
Target:  5'- gGCG-CGGcCGAcGCCGCCCUGCgggaGGUc -3'
miRNA:   3'- -UGCaGUU-GUUcUGGCGGGACGag--CCG- -5'
31027 3' -56.1 NC_006560.1 + 70854 0.67 0.864569
Target:  5'- gACGU-GACGAGGacgcccccCCGCCCgGCUCcGCg -3'
miRNA:   3'- -UGCAgUUGUUCU--------GGCGGGaCGAGcCG- -5'
31027 3' -56.1 NC_006560.1 + 18831 0.67 0.864569
Target:  5'- uGCGUCGggcggcuccGCGAGGCCGCgucucgCCU-CUgGGCg -3'
miRNA:   3'- -UGCAGU---------UGUUCUGGCG------GGAcGAgCCG- -5'
31027 3' -56.1 NC_006560.1 + 130553 0.67 0.863816
Target:  5'- gGCGUgGACGcgcaggucgccacGGACCcccucGCCCUGg-CGGCg -3'
miRNA:   3'- -UGCAgUUGU-------------UCUGG-----CGGGACgaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 140336 0.67 0.856943
Target:  5'- -gGUCAccccgGCGGGACaGCCCcgcggGCgUCGGCg -3'
miRNA:   3'- ugCAGU-----UGUUCUGgCGGGa----CG-AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 16788 0.67 0.856943
Target:  5'- gACGUCGagaACAGGGaCGCCgUGUgcaCGGCc -3'
miRNA:   3'- -UGCAGU---UGUUCUgGCGGgACGa--GCCG- -5'
31027 3' -56.1 NC_006560.1 + 74423 0.67 0.856943
Target:  5'- cUGUCGcccgaggcGCGGGACCGCCUcgGCgcgCGcGCg -3'
miRNA:   3'- uGCAGU--------UGUUCUGGCGGGa-CGa--GC-CG- -5'
31027 3' -56.1 NC_006560.1 + 100102 0.67 0.856943
Target:  5'- ---cCGGCGAuGCCGgCCUGC-CGGCg -3'
miRNA:   3'- ugcaGUUGUUcUGGCgGGACGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 28861 0.67 0.856943
Target:  5'- --aUCGAUggGACCGCCCa--UCGGg -3'
miRNA:   3'- ugcAGUUGuuCUGGCGGGacgAGCCg -5'
31027 3' -56.1 NC_006560.1 + 39253 0.67 0.854615
Target:  5'- aGCGagGGgGGGGCCGCCCUuccgucGCggugggacccggucUCGGCg -3'
miRNA:   3'- -UGCagUUgUUCUGGCGGGA------CG--------------AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 16400 0.67 0.849113
Target:  5'- gGCGUCGccuggagccGCGGuGCCGCCCgcccgcGC-CGGCu -3'
miRNA:   3'- -UGCAGU---------UGUUcUGGCGGGa-----CGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 3947 0.67 0.849113
Target:  5'- cGCGgucggCGGCGAGggcgGCCGCCaggcggcgCUGCgCGGCg -3'
miRNA:   3'- -UGCa----GUUGUUC----UGGCGG--------GACGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.