miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 3' -56.1 NC_006560.1 + 105384 1.1 0.0024
Target:  5'- uACGUCAACAAGACCGCCCUGCUCGGCc -3'
miRNA:   3'- -UGCAGUUGUUCUGGCGGGACGAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 106237 0.81 0.194698
Target:  5'- cGCGuUCGugGAGACCGCCCggGCccgCGGCa -3'
miRNA:   3'- -UGC-AGUugUUCUGGCGGGa-CGa--GCCG- -5'
31027 3' -56.1 NC_006560.1 + 60058 0.77 0.321651
Target:  5'- cGCGggguggacugCAcCGAGGCCGCCgUGUUCGGCg -3'
miRNA:   3'- -UGCa---------GUuGUUCUGGCGGgACGAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 13548 0.76 0.367767
Target:  5'- cACGUCgGGCGGGuCCGCCuuCUGCUcCGGCg -3'
miRNA:   3'- -UGCAG-UUGUUCuGGCGG--GACGA-GCCG- -5'
31027 3' -56.1 NC_006560.1 + 114734 0.75 0.424383
Target:  5'- uGCGcCAGCGAccCCGCCCUGCUgcgcaaguaccgcgCGGCg -3'
miRNA:   3'- -UGCaGUUGUUcuGGCGGGACGA--------------GCCG- -5'
31027 3' -56.1 NC_006560.1 + 83968 0.75 0.427038
Target:  5'- gACGaCGGCGGGcgguucGCCGCCCUGCUgcgggCGGCc -3'
miRNA:   3'- -UGCaGUUGUUC------UGGCGGGACGA-----GCCG- -5'
31027 3' -56.1 NC_006560.1 + 53617 0.75 0.435958
Target:  5'- aGCGUCGACucccucGgCGCCCUGCggCGGCu -3'
miRNA:   3'- -UGCAGUUGuuc---UgGCGGGACGa-GCCG- -5'
31027 3' -56.1 NC_006560.1 + 90372 0.75 0.454116
Target:  5'- gGCGuUCGACGaaaaccacgaggGGGCgGCCCUGC-CGGCc -3'
miRNA:   3'- -UGC-AGUUGU------------UCUGgCGGGACGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 85843 0.74 0.472676
Target:  5'- cGCGUCGACGAGcACgCGCCCgaagGCgUCGaGCc -3'
miRNA:   3'- -UGCAGUUGUUC-UG-GCGGGa---CG-AGC-CG- -5'
31027 3' -56.1 NC_006560.1 + 76601 0.73 0.534424
Target:  5'- cGCGcUCGGCGAggcgugccgccggacGACCGCCCUGC--GGCg -3'
miRNA:   3'- -UGC-AGUUGUU---------------CUGGCGGGACGagCCG- -5'
31027 3' -56.1 NC_006560.1 + 140103 0.73 0.550326
Target:  5'- cGCGUCcACGAGAagaCGUCCUcGCggggCGGCa -3'
miRNA:   3'- -UGCAGuUGUUCUg--GCGGGA-CGa---GCCG- -5'
31027 3' -56.1 NC_006560.1 + 133189 0.73 0.554325
Target:  5'- gGCGUCcGCGGGGCCGCCgUccagagcgaaccgcaGC-CGGCg -3'
miRNA:   3'- -UGCAGuUGUUCUGGCGGgA---------------CGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 76268 0.72 0.590649
Target:  5'- cACGgaccgCGugAcGGCCGCCCUGCgggaGGCc -3'
miRNA:   3'- -UGCa----GUugUuCUGGCGGGACGag--CCG- -5'
31027 3' -56.1 NC_006560.1 + 5290 0.72 0.590649
Target:  5'- gGCGUCGGCGucgucgucGGCCGCCgCgUGCgacggCGGCg -3'
miRNA:   3'- -UGCAGUUGUu-------CUGGCGG-G-ACGa----GCCG- -5'
31027 3' -56.1 NC_006560.1 + 56177 0.72 0.590649
Target:  5'- gACGUUAACcAGcACCGCCCccgGCUCgaugGGCc -3'
miRNA:   3'- -UGCAGUUGuUC-UGGCGGGa--CGAG----CCG- -5'
31027 3' -56.1 NC_006560.1 + 69077 0.72 0.600822
Target:  5'- -aGcCGGCAGuGGCCGCCCUccuggGCUCGGg -3'
miRNA:   3'- ugCaGUUGUU-CUGGCGGGA-----CGAGCCg -5'
31027 3' -56.1 NC_006560.1 + 22371 0.72 0.611018
Target:  5'- gGCGgCGACGGGcaccCCGCCCccgGCUCGGa -3'
miRNA:   3'- -UGCaGUUGUUCu---GGCGGGa--CGAGCCg -5'
31027 3' -56.1 NC_006560.1 + 5086 0.72 0.611018
Target:  5'- gGCGUgCGGCGc-GCCGCCCggGgUCGGCg -3'
miRNA:   3'- -UGCA-GUUGUucUGGCGGGa-CgAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 94544 0.72 0.621229
Target:  5'- cGCG-CcGCGAGGCCgacGCCCUGCUggaGGCc -3'
miRNA:   3'- -UGCaGuUGUUCUGG---CGGGACGAg--CCG- -5'
31027 3' -56.1 NC_006560.1 + 24532 0.72 0.621229
Target:  5'- uGCGggccCGACAcGGCCGCCUggGC-CGGCa -3'
miRNA:   3'- -UGCa---GUUGUuCUGGCGGGa-CGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.