miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 3' -56.1 NC_006560.1 + 218 0.69 0.751717
Target:  5'- cCG-CGGgAGGGCCcgGCCCgcgGCUCGGUg -3'
miRNA:   3'- uGCaGUUgUUCUGG--CGGGa--CGAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 1073 0.68 0.807166
Target:  5'- cCGcCGACGGGgcagaaGCCGCCCgccagGCUcccCGGCg -3'
miRNA:   3'- uGCaGUUGUUC------UGGCGGGa----CGA---GCCG- -5'
31027 3' -56.1 NC_006560.1 + 2074 0.67 0.841088
Target:  5'- cGCGgCGGCGGGGuCCggggGCCCgGCgUCGGCg -3'
miRNA:   3'- -UGCaGUUGUUCU-GG----CGGGaCG-AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 2173 0.66 0.892934
Target:  5'- cGCGgcgGGCAGGGCCucggGCCCgGCgcgcgCGGCc -3'
miRNA:   3'- -UGCag-UUGUUCUGG----CGGGaCGa----GCCG- -5'
31027 3' -56.1 NC_006560.1 + 2271 0.7 0.702542
Target:  5'- cGCGgu-GCGAGugCGCCUcGCcgCGGCg -3'
miRNA:   3'- -UGCaguUGUUCugGCGGGaCGa-GCCG- -5'
31027 3' -56.1 NC_006560.1 + 2308 0.69 0.742055
Target:  5'- cGCGcCGGCGGcGGCCGCCUcGCgcgcgggcgagUCGGCg -3'
miRNA:   3'- -UGCaGUUGUU-CUGGCGGGaCG-----------AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 3773 0.67 0.841088
Target:  5'- cGCG-CGGCGGGACCGCggcGCgcgCGGCc -3'
miRNA:   3'- -UGCaGUUGUUCUGGCGggaCGa--GCCG- -5'
31027 3' -56.1 NC_006560.1 + 3858 0.67 0.869784
Target:  5'- gACGgcgCGGC-AGACCGCCaggcacuccgcggcgGCgUCGGCg -3'
miRNA:   3'- -UGCa--GUUGuUCUGGCGGga-------------CG-AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 3947 0.67 0.849113
Target:  5'- cGCGgucggCGGCGAGggcgGCCGCCaggcggcgCUGCgCGGCg -3'
miRNA:   3'- -UGCa----GUUGUUC----UGGCGG--------GACGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 5086 0.72 0.611018
Target:  5'- gGCGUgCGGCGc-GCCGCCCggGgUCGGCg -3'
miRNA:   3'- -UGCA-GUUGUucUGGCGGGa-CgAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 5290 0.72 0.590649
Target:  5'- gGCGUCGGCGucgucgucGGCCGCCgCgUGCgacggCGGCg -3'
miRNA:   3'- -UGCAGUUGUu-------CUGGCGG-G-ACGa----GCCG- -5'
31027 3' -56.1 NC_006560.1 + 6064 0.68 0.789223
Target:  5'- uCGUUAGCAucGCCGCgCCcGCUCGcGCc -3'
miRNA:   3'- uGCAGUUGUucUGGCG-GGaCGAGC-CG- -5'
31027 3' -56.1 NC_006560.1 + 6525 0.68 0.824475
Target:  5'- uCGUCc-CGGGAUCGCCUcggggGCUCGGg -3'
miRNA:   3'- uGCAGuuGUUCUGGCGGGa----CGAGCCg -5'
31027 3' -56.1 NC_006560.1 + 9124 0.66 0.905767
Target:  5'- cACGUCAuuGCGAGG--GCCCgcagGUcuUCGGCg -3'
miRNA:   3'- -UGCAGU--UGUUCUggCGGGa---CG--AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 10557 0.66 0.911834
Target:  5'- gGCGUCGACGacGGucuCCaGCaCCUGCcCGGg -3'
miRNA:   3'- -UGCAGUUGU--UCu--GG-CG-GGACGaGCCg -5'
31027 3' -56.1 NC_006560.1 + 11298 0.72 0.625317
Target:  5'- gGCG-CGcCAGGGCCGCCUcguucacggccgagaUGCUCGGg -3'
miRNA:   3'- -UGCaGUuGUUCUGGCGGG---------------ACGAGCCg -5'
31027 3' -56.1 NC_006560.1 + 11776 0.69 0.742055
Target:  5'- cGCGUCGACcGGcgucucGCCGCCggggggggGCUCGGUc -3'
miRNA:   3'- -UGCAGUUGuUC------UGGCGGga------CGAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 12685 0.68 0.832872
Target:  5'- cGCGcCGACGAuGgCGCCCgUGUggUCGGCg -3'
miRNA:   3'- -UGCaGUUGUUcUgGCGGG-ACG--AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 13548 0.76 0.367767
Target:  5'- cACGUCgGGCGGGuCCGCCuuCUGCUcCGGCg -3'
miRNA:   3'- -UGCAG-UUGUUCuGGCGG--GACGA-GCCG- -5'
31027 3' -56.1 NC_006560.1 + 13781 0.69 0.780036
Target:  5'- cGCGcCGGCucGAUCGCCCucggUGUUCGGg -3'
miRNA:   3'- -UGCaGUUGuuCUGGCGGG----ACGAGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.