miRNA display CGI


Results 41 - 60 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 48578 0.66 0.404785
Target:  5'- cGCGCCAGcacgcggcaGCUGCaCCgCCaGGCgGCGCUc -3'
miRNA:   3'- -UGCGGUC---------CGACG-GG-GG-CCGgCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 89300 0.66 0.404785
Target:  5'- aAUGCC-GGCcGUUCCCGGCgGgACCu -3'
miRNA:   3'- -UGCGGuCCGaCGGGGGCCGgCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 111351 0.66 0.404785
Target:  5'- gGCGCCuGGCcacgcgcgUGgCCCgGGCCaCGCUGg -3'
miRNA:   3'- -UGCGGuCCG--------ACgGGGgCCGGcGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 35329 0.66 0.403984
Target:  5'- -gGCCcucccggAGGCcgccGCCCCCGGCC-C-CCGa -3'
miRNA:   3'- ugCGG-------UCCGa---CGGGGGCCGGcGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 107074 0.66 0.399995
Target:  5'- aACGCCA-GCUacguggugacccacgGCCCCCuGGCCcGCGgCGu -3'
miRNA:   3'- -UGCGGUcCGA---------------CGGGGG-CCGG-CGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 149871 0.66 0.399995
Target:  5'- cACcCCcGGCa-CCCCCGGCCGCggaagggccccgcgcGCCGa -3'
miRNA:   3'- -UGcGGuCCGacGGGGGCCGGCG---------------UGGC- -5'
31027 5' -67.4 NC_006560.1 + 110279 0.66 0.397614
Target:  5'- gGCGCUgucccucugguacggGGGCgcgGCCCUcgucgcccuguuggCGGCCGCGCa- -3'
miRNA:   3'- -UGCGG---------------UCCGa--CGGGG--------------GCCGGCGUGgc -5'
31027 5' -67.4 NC_006560.1 + 65922 0.66 0.396822
Target:  5'- -gGCCguGGGCcGCCCCCgcagguccGGCCGcCAgCGg -3'
miRNA:   3'- ugCGG--UCCGaCGGGGG--------CCGGC-GUgGC- -5'
31027 5' -67.4 NC_006560.1 + 133322 0.66 0.396822
Target:  5'- aGCGCCugguGGCUGauggCCUCGGC-GaCGCCGa -3'
miRNA:   3'- -UGCGGu---CCGACg---GGGGCCGgC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 74982 0.66 0.396822
Target:  5'- -gGCCGuGGCcGCCcugagCCCGGCCGUcCUGg -3'
miRNA:   3'- ugCGGU-CCGaCGG-----GGGCCGGCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 78895 0.66 0.396822
Target:  5'- uGCGCgAGGC-GUUCCCGGgggcgcCCGCguACCGg -3'
miRNA:   3'- -UGCGgUCCGaCGGGGGCC------GGCG--UGGC- -5'
31027 5' -67.4 NC_006560.1 + 79290 0.66 0.396822
Target:  5'- gACuCCGGGUcGCCgccgggCCCGGCCGCcCCc -3'
miRNA:   3'- -UGcGGUCCGaCGG------GGGCCGGCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 140019 0.66 0.396822
Target:  5'- aACGCgAGGCcGUgggCCUGGCCGgGCUGg -3'
miRNA:   3'- -UGCGgUCCGaCGg--GGGCCGGCgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 6129 0.66 0.396822
Target:  5'- cGCGCCugcgcGGC-GUCCCCGGuuGC-CUa -3'
miRNA:   3'- -UGCGGu----CCGaCGGGGGCCggCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 23299 0.66 0.396822
Target:  5'- cGCGCCccugcuGGCgcgcgagaacGCCgCCgCGGCCGgCGCCGc -3'
miRNA:   3'- -UGCGGu-----CCGa---------CGG-GG-GCCGGC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 28724 0.66 0.396822
Target:  5'- gAUGCC-GGC-GCCgCCGGUugguCGCGCCa -3'
miRNA:   3'- -UGCGGuCCGaCGGgGGCCG----GCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 139314 0.66 0.396031
Target:  5'- gGCGCCucgggcgcgggagAGGCggGCgCCUCGGCgGC-CCGc -3'
miRNA:   3'- -UGCGG-------------UCCGa-CG-GGGGCCGgCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 16841 0.66 0.392093
Target:  5'- gGCGCUccagauguccaccgaGGGCguguacggGUCCCCGGCCaGgACCu -3'
miRNA:   3'- -UGCGG---------------UCCGa-------CGGGGGCCGG-CgUGGc -5'
31027 5' -67.4 NC_006560.1 + 2495 0.66 0.392093
Target:  5'- cGCGCgCAGGCgGCCUCgacgcgcgcgaagaGGCCGgGCCc -3'
miRNA:   3'- -UGCG-GUCCGaCGGGGg-------------CCGGCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 27396 0.66 0.38896
Target:  5'- -gGCCGGGCccuCCCgCGGCgGCGCgCGc -3'
miRNA:   3'- ugCGGUCCGac-GGGgGCCGgCGUG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.