miRNA display CGI


Results 21 - 40 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 4465 0.68 0.296404
Target:  5'- aGCGCCGGcGCgccuccGCCaCCuCGGgCGCGCCc -3'
miRNA:   3'- -UGCGGUC-CGa-----CGG-GG-GCCgGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 4540 0.68 0.283783
Target:  5'- cGCGCCccgggggcggGGGCUcgGCCCCgGGCCagggcuCGCCGc -3'
miRNA:   3'- -UGCGG----------UCCGA--CGGGGgCCGGc-----GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 4739 0.68 0.316146
Target:  5'- gACGCCcgucucGGCggcgGCCCgCGGCgGCGgCGg -3'
miRNA:   3'- -UGCGGu-----CCGa---CGGGgGCCGgCGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 5641 0.7 0.237539
Target:  5'- gGCGaCGGGCgGCgCCCGGCCgGCuCCGc -3'
miRNA:   3'- -UGCgGUCCGaCGgGGGCCGG-CGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 6077 0.68 0.316146
Target:  5'- cGCGCCc-GCUcgcGCCCUCGcgucgagggcGCCGCGCCGc -3'
miRNA:   3'- -UGCGGucCGA---CGGGGGC----------CGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 6129 0.66 0.396822
Target:  5'- cGCGCCugcgcGGC-GUCCCCGGuuGC-CUa -3'
miRNA:   3'- -UGCGGu----CCGaCGGGGGCCggCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 6332 0.67 0.351216
Target:  5'- gACGCCgcgcGGGC-GCcccgCCCCGGCC-CGCCc -3'
miRNA:   3'- -UGCGG----UCCGaCG----GGGGCCGGcGUGGc -5'
31027 5' -67.4 NC_006560.1 + 6415 0.7 0.232224
Target:  5'- gGCGCCGcGGCcgGCCCgCCGcacaacGCCGuCGCCGc -3'
miRNA:   3'- -UGCGGU-CCGa-CGGG-GGC------CGGC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 7424 0.68 0.302877
Target:  5'- gACcCCAGGCaGCCCCgCGGaCCGcCGCgGa -3'
miRNA:   3'- -UGcGGUCCGaCGGGG-GCC-GGC-GUGgC- -5'
31027 5' -67.4 NC_006560.1 + 7557 0.76 0.084818
Target:  5'- aGCGCgAGGCUcggGCCCCgGGCCGCcauucgcgcucgaGCCGc -3'
miRNA:   3'- -UGCGgUCCGA---CGGGGgCCGGCG-------------UGGC- -5'
31027 5' -67.4 NC_006560.1 + 7633 0.69 0.270395
Target:  5'- gGCGCUcuuccggccgucgGGGCgaccgucGCCCcucugggCCGGCCGCGCCc -3'
miRNA:   3'- -UGCGG-------------UCCGa------CGGG-------GGCCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 8086 0.67 0.343986
Target:  5'- cGCGUUcGGCUGCggcagCCCCGcGCCGacCGCCGc -3'
miRNA:   3'- -UGCGGuCCGACG-----GGGGC-CGGC--GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 9168 0.72 0.16668
Target:  5'- aACGUCGGGC-GCCUCgGGCCcgcgacgggcgucaGCGCCGg -3'
miRNA:   3'- -UGCGGUCCGaCGGGGgCCGG--------------CGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 9549 0.75 0.106169
Target:  5'- -gGCCGgcGGCggccaGCCCCagGGCCGCGCCGa -3'
miRNA:   3'- ugCGGU--CCGa----CGGGGg-CCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 9608 0.85 0.01904
Target:  5'- aGCGCgGGGCgcgGCCCCUggGGCCGCGCCGa -3'
miRNA:   3'- -UGCGgUCCGa--CGGGGG--CCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 9843 0.68 0.283783
Target:  5'- -gGCCGGGCcugGCCUCCauGGCgGCGuCCGu -3'
miRNA:   3'- ugCGGUCCGa--CGGGGG--CCGgCGU-GGC- -5'
31027 5' -67.4 NC_006560.1 + 10474 0.72 0.14834
Target:  5'- cACGCCgccucggggcccgGGGCggggGCCCCgucggguCGGCCGUACCa -3'
miRNA:   3'- -UGCGG-------------UCCGa---CGGGG-------GCCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 10784 0.66 0.404785
Target:  5'- cCGCCAGGa-GCCCCC-GCgGgGCCc -3'
miRNA:   3'- uGCGGUCCgaCGGGGGcCGgCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 10913 0.75 0.096224
Target:  5'- gACGCC-GGCcGCCgCCGGCgGCGCCu -3'
miRNA:   3'- -UGCGGuCCGaCGGgGGCCGgCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 12527 0.75 0.101081
Target:  5'- uCGCCGGGUcaguagggcgUGUCCCgGcGCCGCGCCGu -3'
miRNA:   3'- uGCGGUCCG----------ACGGGGgC-CGGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.