miRNA display CGI


Results 1 - 20 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 92 0.73 0.135402
Target:  5'- cGCGCCccGCgccccGCCCCCgcGGCCGCgGCCGg -3'
miRNA:   3'- -UGCGGucCGa----CGGGGG--CCGGCG-UGGC- -5'
31027 5' -67.4 NC_006560.1 + 280 0.66 0.381202
Target:  5'- uCGCgAGGCccgcuucgGUCCCCaGGCCGCAaCGc -3'
miRNA:   3'- uGCGgUCCGa-------CGGGGG-CCGGCGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 520 0.74 0.11996
Target:  5'- gGCGCCgggGGGCgGCggCCGGCCGCGCCc -3'
miRNA:   3'- -UGCGG---UCCGaCGggGGCCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 653 0.7 0.221895
Target:  5'- gGCcCCAGGUUcGCaCCCCGGCgCGC-CCGc -3'
miRNA:   3'- -UGcGGUCCGA-CG-GGGGCCG-GCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 791 0.67 0.343986
Target:  5'- -gGCCucGGGUUcGCUUCCGGCCGCcgcgcucacggaACCGg -3'
miRNA:   3'- ugCGG--UCCGA-CGGGGGCCGGCG------------UGGC- -5'
31027 5' -67.4 NC_006560.1 + 898 0.73 0.145526
Target:  5'- cCGCCGGG--GCCgCCGGCCGCucCCGg -3'
miRNA:   3'- uGCGGUCCgaCGGgGGCCGGCGu-GGC- -5'
31027 5' -67.4 NC_006560.1 + 978 0.7 0.232224
Target:  5'- cACGCCcggGGGCgcGCcccucgCCCCGGCCgggGCGCCGu -3'
miRNA:   3'- -UGCGG---UCCGa-CG------GGGGCCGG---CGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 1095 0.74 0.12593
Target:  5'- cCGCCAGGCU--CCCCGGCgGCGCg- -3'
miRNA:   3'- uGCGGUCCGAcgGGGGCCGgCGUGgc -5'
31027 5' -67.4 NC_006560.1 + 1205 0.69 0.24241
Target:  5'- gACcCCAGGCUccccgggggcgggGCCCCU-GCCGCGCCc -3'
miRNA:   3'- -UGcGGUCCGA-------------CGGGGGcCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 1292 0.71 0.175973
Target:  5'- cGCGCCGGGCcGCCCggguuCCGcCCGCACgGc -3'
miRNA:   3'- -UGCGGUCCGaCGGG-----GGCcGGCGUGgC- -5'
31027 5' -67.4 NC_006560.1 + 1355 0.66 0.421009
Target:  5'- uGCGCgCGGGUc-CCCCgCGGCCcGCACgGc -3'
miRNA:   3'- -UGCG-GUCCGacGGGG-GCCGG-CGUGgC- -5'
31027 5' -67.4 NC_006560.1 + 1527 0.71 0.197774
Target:  5'- gGCcCCGGGCgcGCgCCCGGCCaCGCCGu -3'
miRNA:   3'- -UGcGGUCCGa-CGgGGGCCGGcGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 1902 0.71 0.197774
Target:  5'- gGCGCC-GGCUaccaGUCCUCGGCgGcCGCCGg -3'
miRNA:   3'- -UGCGGuCCGA----CGGGGGCCGgC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 2173 0.67 0.336864
Target:  5'- cGCGgCGGGCaggGCCucgggCCCGGCgCGCGCgGc -3'
miRNA:   3'- -UGCgGUCCGa--CGG-----GGGCCG-GCGUGgC- -5'
31027 5' -67.4 NC_006560.1 + 2219 0.66 0.381202
Target:  5'- aGCGCCAGGUaGa--CgGGCCGCAgCGg -3'
miRNA:   3'- -UGCGGUCCGaCgggGgCCGGCGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 2495 0.66 0.392093
Target:  5'- cGCGCgCAGGCgGCCUCgacgcgcgcgaagaGGCCGgGCCc -3'
miRNA:   3'- -UGCG-GUCCGaCGGGGg-------------CCGGCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 3612 0.68 0.296404
Target:  5'- gGCGCC-GGCgacgagGCCCaCGGCgCGCACgGc -3'
miRNA:   3'- -UGCGGuCCGa-----CGGGgGCCG-GCGUGgC- -5'
31027 5' -67.4 NC_006560.1 + 3872 0.66 0.412848
Target:  5'- cCGCCAGGCa-CUCCgCGGCgGCGUCGg -3'
miRNA:   3'- uGCGGUCCGacGGGG-GCCGgCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 3942 0.67 0.363753
Target:  5'- gGCGCCgcggucggcggcgaGGGCgGCCgCCaGGCgGCGCUGc -3'
miRNA:   3'- -UGCGG--------------UCCGaCGGgGG-CCGgCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 4273 0.68 0.29004
Target:  5'- uGCGCCGGGC-GCCCgaGGCCucgaagcagGCGCgGu -3'
miRNA:   3'- -UGCGGUCCGaCGGGggCCGG---------CGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.