miRNA display CGI


Results 1 - 20 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 105420 1.07 0.000363
Target:  5'- gACGCCAGGCUGCCCCCGGCCGCACCGa -3'
miRNA:   3'- -UGCGGUCCGACGGGGGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 9608 0.85 0.01904
Target:  5'- aGCGCgGGGCgcgGCCCCUggGGCCGCGCCGa -3'
miRNA:   3'- -UGCGgUCCGa--CGGGGG--CCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 25017 0.81 0.038974
Target:  5'- cGCGCCGuGCUGCCCgcgcucgaCGGCCGCGCCGc -3'
miRNA:   3'- -UGCGGUcCGACGGGg-------GCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 18414 0.8 0.039977
Target:  5'- cGCGCCugcGGCUGCgaCCCGGCCGCcgcgGCCGg -3'
miRNA:   3'- -UGCGGu--CCGACGg-GGGCCGGCG----UGGC- -5'
31027 5' -67.4 NC_006560.1 + 34966 0.79 0.048847
Target:  5'- gGCGCCGGGCUccgccggGCCCCCcgggcgccucggGGCCGCggGCCGg -3'
miRNA:   3'- -UGCGGUCCGA-------CGGGGG------------CCGGCG--UGGC- -5'
31027 5' -67.4 NC_006560.1 + 77952 0.79 0.048971
Target:  5'- -gGCCGGGCcGCCCCCGGCC--ACCGg -3'
miRNA:   3'- ugCGGUCCGaCGGGGGCCGGcgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 25324 0.79 0.051511
Target:  5'- cGCGCguGcGCUggGCCgCCGGCCGCGCCGa -3'
miRNA:   3'- -UGCGguC-CGA--CGGgGGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 60266 0.78 0.06145
Target:  5'- cGCGCCcGGCcGCCCCCgGGCCcgGCGCCa -3'
miRNA:   3'- -UGCGGuCCGaCGGGGG-CCGG--CGUGGc -5'
31027 5' -67.4 NC_006560.1 + 131190 0.78 0.064615
Target:  5'- gGCGCCcGGCcgccUGUCCCCGGCgcUGCGCCGg -3'
miRNA:   3'- -UGCGGuCCG----ACGGGGGCCG--GCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 66223 0.77 0.067937
Target:  5'- aACGCCAGGUagagaaacgcgGCCCCCGGgCGC-CCGa -3'
miRNA:   3'- -UGCGGUCCGa----------CGGGGGCCgGCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 23357 0.77 0.067937
Target:  5'- gACGCCGccGCcGCCCCCGGCCuCGCCGg -3'
miRNA:   3'- -UGCGGUc-CGaCGGGGGCCGGcGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 144040 0.76 0.078919
Target:  5'- cCGCCGGGCUcgccuaagcgGCCCgCGGCCGCccCCGg -3'
miRNA:   3'- uGCGGUCCGA----------CGGGgGCCGGCGu-GGC- -5'
31027 5' -67.4 NC_006560.1 + 105597 0.76 0.082738
Target:  5'- gGCGCCgccccggAGGCcgccccccgGCCCCCGGCCGCcCCu -3'
miRNA:   3'- -UGCGG-------UCCGa--------CGGGGGCCGGCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 102571 0.76 0.082944
Target:  5'- aGCGCCGcGGCcGCCgCCCGgcGCCGCGCCu -3'
miRNA:   3'- -UGCGGU-CCGaCGG-GGGC--CGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 7557 0.76 0.084818
Target:  5'- aGCGCgAGGCUcggGCCCCgGGCCGCcauucgcgcucgaGCCGc -3'
miRNA:   3'- -UGCGgUCCGA---CGGGGgCCGGCG-------------UGGC- -5'
31027 5' -67.4 NC_006560.1 + 24832 0.76 0.087164
Target:  5'- cGCGCCGuGCUcGCCUCCGGCCGCGucuucgggcCCGg -3'
miRNA:   3'- -UGCGGUcCGA-CGGGGGCCGGCGU---------GGC- -5'
31027 5' -67.4 NC_006560.1 + 42638 0.76 0.08935
Target:  5'- cGCGCCAGGgcggcgaacgcCUGCCCCCGGg-GCGCCa -3'
miRNA:   3'- -UGCGGUCC-----------GACGGGGGCCggCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 110724 0.75 0.093879
Target:  5'- cGCGCCAuGGCcgaGCCUCCGGUgccaCGCACCGc -3'
miRNA:   3'- -UGCGGU-CCGa--CGGGGGCCG----GCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 130156 0.75 0.093879
Target:  5'- -gGCCuGGCUGCCCCCGaggacCCGCgACCGc -3'
miRNA:   3'- ugCGGuCCGACGGGGGCc----GGCG-UGGC- -5'
31027 5' -67.4 NC_006560.1 + 23700 0.75 0.096224
Target:  5'- uGCGCCugcgcGGCgaccuccgcGUCCCCGGCgGCGCCGa -3'
miRNA:   3'- -UGCGGu----CCGa--------CGGGGGCCGgCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.