miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 3' -54.8 NC_006560.1 + 147673 0.67 0.895079
Target:  5'- cGCACCGccUCCUCgGCCUcggcGCGcGugCGGg -3'
miRNA:   3'- uUGUGGU--AGGAGaUGGA----CGU-CugGCC- -5'
31028 3' -54.8 NC_006560.1 + 145819 0.68 0.858833
Target:  5'- cACGCCcggCCUCgcgcgGCGGGCCGGg -3'
miRNA:   3'- uUGUGGua-GGAGauggaCGUCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 138184 0.66 0.939302
Target:  5'- cGCGCCAUCgCgucccggggCUGCCUGCGGcacgacgcucugucGCgCGGg -3'
miRNA:   3'- uUGUGGUAG-Ga--------GAUGGACGUC--------------UG-GCC- -5'
31028 3' -54.8 NC_006560.1 + 135341 0.73 0.609325
Target:  5'- --aGCCGUCgUCgGCCggccGCGGACCGGa -3'
miRNA:   3'- uugUGGUAGgAGaUGGa---CGUCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 133451 0.69 0.826017
Target:  5'- -cCACgCGUCCUCggGCCcGCGGGcuCCGGg -3'
miRNA:   3'- uuGUG-GUAGGAGa-UGGaCGUCU--GGCC- -5'
31028 3' -54.8 NC_006560.1 + 132669 0.68 0.874004
Target:  5'- uACGCCAcgCaCUCgagguuggUGCCgggGCGGACCGGc -3'
miRNA:   3'- uUGUGGUa-G-GAG--------AUGGa--CGUCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 129769 0.67 0.881258
Target:  5'- gGACGCCAUCaUCgGCCUGCuGGACgCGc -3'
miRNA:   3'- -UUGUGGUAGgAGaUGGACG-UCUG-GCc -5'
31028 3' -54.8 NC_006560.1 + 124328 0.66 0.925448
Target:  5'- gAGCGCCA-CCUCcgcgggUugCUGCGGGgcguCCGGc -3'
miRNA:   3'- -UUGUGGUaGGAG------AugGACGUCU----GGCC- -5'
31028 3' -54.8 NC_006560.1 + 123195 0.71 0.692096
Target:  5'- gGACGCCGUCUcgCUGCg-GCGGGCCGu -3'
miRNA:   3'- -UUGUGGUAGGa-GAUGgaCGUCUGGCc -5'
31028 3' -54.8 NC_006560.1 + 121965 0.68 0.866527
Target:  5'- cGGCGCCuggCCgagacgC-ACCUGCGGGCCGcGg -3'
miRNA:   3'- -UUGUGGua-GGa-----GaUGGACGUCUGGC-C- -5'
31028 3' -54.8 NC_006560.1 + 119364 0.71 0.721528
Target:  5'- uACGCCuaCCUCUGCCUGgGGuucaaccGCCGGc -3'
miRNA:   3'- uUGUGGuaGGAGAUGGACgUC-------UGGCC- -5'
31028 3' -54.8 NC_006560.1 + 111664 0.66 0.935882
Target:  5'- cGGCACCAaCCUCgucacgGCgCUGguGAUgGGc -3'
miRNA:   3'- -UUGUGGUaGGAGa-----UG-GACguCUGgCC- -5'
31028 3' -54.8 NC_006560.1 + 105085 0.66 0.937851
Target:  5'- -uCGCCGUCCUCgcgggGCCgGCccgggaaggggagcgGGACCGc -3'
miRNA:   3'- uuGUGGUAGGAGa----UGGaCG---------------UCUGGCc -5'
31028 3' -54.8 NC_006560.1 + 104389 1.07 0.004397
Target:  5'- cAACACCAUCCUCUACCUGCAGACCGGc -3'
miRNA:   3'- -UUGUGGUAGGAGAUGGACGUCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 103273 0.66 0.919862
Target:  5'- cGCAgCGUCUUCUGCgaGacgaacagcaGGACCGGa -3'
miRNA:   3'- uUGUgGUAGGAGAUGgaCg---------UCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 95948 0.67 0.888285
Target:  5'- ---cCCAagCUCgcgGCCgGCGGGCCGGa -3'
miRNA:   3'- uuguGGUagGAGa--UGGaCGUCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 95905 0.69 0.81734
Target:  5'- cGACGucuucuCCAUCCUCUAcucgguCCUGCAGcACCuGGc -3'
miRNA:   3'- -UUGU------GGUAGGAGAU------GGACGUC-UGG-CC- -5'
31028 3' -54.8 NC_006560.1 + 92630 0.76 0.441047
Target:  5'- cGCACCcgcaaguucGUCCUCgccUGCCcGCGGGCCGGg -3'
miRNA:   3'- uUGUGG---------UAGGAG---AUGGaCGUCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 90135 0.73 0.598971
Target:  5'- gGACGCCGUCCggcggaucccgcUCUACCcccUGCAGauguucauGCCGGa -3'
miRNA:   3'- -UUGUGGUAGG------------AGAUGG---ACGUC--------UGGCC- -5'
31028 3' -54.8 NC_006560.1 + 89764 0.66 0.930788
Target:  5'- cGugGCCGUCgUCgucggguCCcGCAcGACCGGg -3'
miRNA:   3'- -UugUGGUAGgAGau-----GGaCGU-CUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.