miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 122183 0.66 0.503374
Target:  5'- aGCGGagcgacgcgaccuGCUGAUUGcGCACCGGC-GGUa -3'
miRNA:   3'- cCGCC-------------CGGCUGAC-CGUGGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 23034 0.66 0.495221
Target:  5'- aGGCcauGGGCUGGCUGcagaacccGCGCgugaCGGCcGGCGa -3'
miRNA:   3'- -CCG---CCCGGCUGAC--------CGUG----GCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 106579 0.66 0.495221
Target:  5'- cGgGGGCCGGggcCUGGCcgccCCGGUcguccGGCGg -3'
miRNA:   3'- cCgCCCGGCU---GACCGu---GGCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 23764 0.66 0.495221
Target:  5'- cGUGGGCCucgucGCcGGCGCCGccgcgccgcuGCUGGCc -3'
miRNA:   3'- cCGCCCGGc----UGaCCGUGGC----------CGACCGc -5'
31028 5' -64.9 NC_006560.1 + 24532 0.66 0.495221
Target:  5'- uGCGGGcCCGACacGGcCGCCugGGCcGGCa -3'
miRNA:   3'- cCGCCC-GGCUGa-CC-GUGG--CCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 88889 0.66 0.495221
Target:  5'- cGGcCGGGCgagGGCcgGGuCGCCGGCcGGCc -3'
miRNA:   3'- -CC-GCCCGg--CUGa-CC-GUGGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 121987 0.66 0.495221
Target:  5'- uGCGGGCCG-CgGuGUACCGGgaGGa- -3'
miRNA:   3'- cCGCCCGGCuGaC-CGUGGCCgaCCgc -5'
31028 5' -64.9 NC_006560.1 + 138312 0.66 0.495221
Target:  5'- cGUGGGCCGGuCgGaGCGCCagcGGCUGGa- -3'
miRNA:   3'- cCGCCCGGCU-GaC-CGUGG---CCGACCgc -5'
31028 5' -64.9 NC_006560.1 + 84697 0.67 0.489819
Target:  5'- cGGCGcGGgCGACgGGCGCCucGGCgccaccagccgcgaGGCGc -3'
miRNA:   3'- -CCGC-CCgGCUGaCCGUGG--CCGa-------------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 59529 0.67 0.487128
Target:  5'- aGGCGGGCgGGCUcgGGUcgguuaaauacgccuCCGGCccGGCa -3'
miRNA:   3'- -CCGCCCGgCUGA--CCGu--------------GGCCGa-CCGc -5'
31028 5' -64.9 NC_006560.1 + 2639 0.67 0.486232
Target:  5'- uGGCGGcGCgCGACgacgGGCccgUCGGCgGGCc -3'
miRNA:   3'- -CCGCC-CG-GCUGa---CCGu--GGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 25465 0.67 0.486232
Target:  5'- cGGCGGccGCCGAggaCUGGUAgCCGGCgccGCc -3'
miRNA:   3'- -CCGCC--CGGCU---GACCGU-GGCCGac-CGc -5'
31028 5' -64.9 NC_006560.1 + 81174 0.67 0.486232
Target:  5'- uGCGGGaCCgcggcgGACaUGGCGCgGGUgggGGCGc -3'
miRNA:   3'- cCGCCC-GG------CUG-ACCGUGgCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 23424 0.67 0.486232
Target:  5'- uGGCGGccgcccucgccGCCGACcgcGGCGCCGcccccGC-GGCGg -3'
miRNA:   3'- -CCGCC-----------CGGCUGa--CCGUGGC-----CGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 41035 0.67 0.486232
Target:  5'- -aCGGGCCGcaccGCguagauGCAUCGGCgGGCGg -3'
miRNA:   3'- ccGCCCGGC----UGac----CGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 54137 0.67 0.486232
Target:  5'- aGCGGGCgcccuCGACcc-CACCGGCgaGGCGa -3'
miRNA:   3'- cCGCCCG-----GCUGaccGUGGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 133136 0.67 0.486232
Target:  5'- cGGUGGGCgGcCUGGC-CgCGGCaGcGCGc -3'
miRNA:   3'- -CCGCCCGgCuGACCGuG-GCCGaC-CGC- -5'
31028 5' -64.9 NC_006560.1 + 149490 0.67 0.484444
Target:  5'- cGGCccGGGCCGACgcuccccgcccgGGcCGCCGGCccgGGa- -3'
miRNA:   3'- -CCG--CCCGGCUGa-----------CC-GUGGCCGa--CCgc -5'
31028 5' -64.9 NC_006560.1 + 127152 0.67 0.477323
Target:  5'- uGCGGGUCGcggcgucgaGCUcGGCggcguccuGCCGGC-GGCGg -3'
miRNA:   3'- cCGCCCGGC---------UGA-CCG--------UGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 85749 0.67 0.477323
Target:  5'- aGGCGcuuGuuGGCguaGGCGCgCGGgUGGCGg -3'
miRNA:   3'- -CCGCc--CggCUGa--CCGUG-GCCgACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.