miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 3887 0.72 0.239427
Target:  5'- cGGCGGcGUCGGC-GGCGUCGGC-GGCGu -3'
miRNA:   3'- -CCGCC-CGGCUGaCCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 3938 0.67 0.451094
Target:  5'- gGGCGGcGCCG-C-GGuCGgCGGCgagGGCGg -3'
miRNA:   3'- -CCGCC-CGGCuGaCC-GUgGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 4012 0.73 0.199093
Target:  5'- cGGCGaGGCCGGg-GGCGgCGGC-GGCGu -3'
miRNA:   3'- -CCGC-CCGGCUgaCCGUgGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 4040 0.72 0.244923
Target:  5'- -cCGGGgCGGCggcgcGGCGCCGGCcgcGGCGg -3'
miRNA:   3'- ccGCCCgGCUGa----CCGUGGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 4091 0.68 0.401129
Target:  5'- gGGCGcGuaGGCgcGGCGCaGGCUGGCGg -3'
miRNA:   3'- -CCGCcCggCUGa-CCGUGgCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 4713 0.71 0.273986
Target:  5'- cGGCGGcGCUcGCUGcGC-CCGGC-GGCGa -3'
miRNA:   3'- -CCGCC-CGGcUGAC-CGuGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 4750 0.66 0.541203
Target:  5'- cGGCGgcGGCCcGC-GGCGgCGGC-GGCGc -3'
miRNA:   3'- -CCGC--CCGGcUGaCCGUgGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 4833 0.71 0.279502
Target:  5'- gGGuCGGGguccgagUCGAC-GGCGCCGGC-GGCGa -3'
miRNA:   3'- -CC-GCCC-------GGCUGaCCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 4879 0.7 0.319222
Target:  5'- cGGCGG--CGGC-GGCGCCGGCgggGGCc -3'
miRNA:   3'- -CCGCCcgGCUGaCCGUGGCCGa--CCGc -5'
31028 5' -64.9 NC_006560.1 + 5175 0.7 0.31243
Target:  5'- gGGCGGGCCG-C-GGCGaCGGCggccccgacGGCGg -3'
miRNA:   3'- -CCGCCCGGCuGaCCGUgGCCGa--------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 5353 0.7 0.31243
Target:  5'- cGGCGGGCCGuCguccGGguCCGGCgagcccGCGc -3'
miRNA:   3'- -CCGCCCGGCuGa---CCguGGCCGac----CGC- -5'
31028 5' -64.9 NC_006560.1 + 5650 0.7 0.31243
Target:  5'- cGGCGcccGGCCGGCUccgccccggGGCGCgggggCGGCcGGCGg -3'
miRNA:   3'- -CCGC---CCGGCUGA---------CCGUG-----GCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 5761 0.69 0.340259
Target:  5'- uGC-GGCCGGC-GGCGCCGcGCgcaGGCGc -3'
miRNA:   3'- cCGcCCGGCUGaCCGUGGC-CGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 8550 0.69 0.369838
Target:  5'- gGGUGGGgCGACugUGGCugCGGCgaucccgucaGCGg -3'
miRNA:   3'- -CCGCCCgGCUG--ACCGugGCCGac--------CGC- -5'
31028 5' -64.9 NC_006560.1 + 8678 0.72 0.239427
Target:  5'- cGGCGGcGgCGcCUGaGCGCCGucuGCUGGCGc -3'
miRNA:   3'- -CCGCC-CgGCuGAC-CGUGGC---CGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 8900 0.66 0.513417
Target:  5'- cGCGGGCCacGCgUGGUcugucuuCCGGCgcggGGCGc -3'
miRNA:   3'- cCGCCCGGc-UG-ACCGu------GGCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 9087 0.67 0.451094
Target:  5'- cGGCGGGgCGACggcgGaGCGCgCGcGC-GGCGc -3'
miRNA:   3'- -CCGCCCgGCUGa---C-CGUG-GC-CGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 9861 0.71 0.26796
Target:  5'- uGGCGGcGuCCGuggGGCACCGGgggGGCGg -3'
miRNA:   3'- -CCGCC-C-GGCugaCCGUGGCCga-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 10234 0.69 0.34749
Target:  5'- gGGUGGG-CGGCgggGGCGCgGGUcgcGGCGg -3'
miRNA:   3'- -CCGCCCgGCUGa--CCGUGgCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 11474 0.68 0.425675
Target:  5'- cGCGuGGCCGucaGCUcGUACCGGgaGGCc -3'
miRNA:   3'- cCGC-CCGGC---UGAcCGUGGCCgaCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.