miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 1892 0.75 0.157107
Target:  5'- cGCGGG-CGGC-GGCGCCGGCUaccaguccucGGCGg -3'
miRNA:   3'- cCGCCCgGCUGaCCGUGGCCGA----------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 1990 0.67 0.45975
Target:  5'- gGGcCGGGCCaGCUccagGGCGgCGGCguccucGGCGu -3'
miRNA:   3'- -CC-GCCCGGcUGA----CCGUgGCCGa-----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 2043 0.7 0.31243
Target:  5'- cGGCGcGGCCGGC-GGCccagcgcacGCgCGGCgcGGCGg -3'
miRNA:   3'- -CCGC-CCGGCUGaCCG---------UG-GCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 2079 0.69 0.333137
Target:  5'- nGGCGGGguCCGGg-GGC-CCGGCgucGGCGc -3'
miRNA:   3'- -CCGCCC--GGCUgaCCGuGGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 2175 0.69 0.34749
Target:  5'- cGGCGGGCagGGCcucgGGC-CCGGCgcgcGCGg -3'
miRNA:   3'- -CCGCCCGg-CUGa---CCGuGGCCGac--CGC- -5'
31028 5' -64.9 NC_006560.1 + 2294 0.67 0.468494
Target:  5'- cGGCGGaaGUCGGgc-GCGCCGGC-GGCGg -3'
miRNA:   3'- -CCGCC--CGGCUgacCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 2346 0.69 0.369838
Target:  5'- cGGCGcGGCCGucgaGCgcgGGCAgcaCGGCgcGGCGg -3'
miRNA:   3'- -CCGC-CCGGC----UGa--CCGUg--GCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 2580 0.7 0.305749
Target:  5'- cGGCGGGCCagcgGACgucGCACUGcGC-GGCGg -3'
miRNA:   3'- -CCGCCCGG----CUGac-CGUGGC-CGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 2639 0.67 0.486232
Target:  5'- uGGCGGcGCgCGACgacgGGCccgUCGGCgGGCc -3'
miRNA:   3'- -CCGCC-CG-GCUGa---CCGu--GGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 2715 0.67 0.445943
Target:  5'- cGGCGgcGGCCGccagcaggcccaggaACUcgacGGCGCCGGCgaaGGCc -3'
miRNA:   3'- -CCGC--CCGGC---------------UGA----CCGUGGCCGa--CCGc -5'
31028 5' -64.9 NC_006560.1 + 3068 0.7 0.319222
Target:  5'- gGGCGcGGCCGGa--GC-CCGGCUcgGGCGg -3'
miRNA:   3'- -CCGC-CCGGCUgacCGuGGCCGA--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 3221 0.73 0.199093
Target:  5'- gGGCGGcGgCGGCgGGCGgCGGCgugugGGCGg -3'
miRNA:   3'- -CCGCC-CgGCUGaCCGUgGCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 3321 0.8 0.06956
Target:  5'- cGCGGGCCGGg-GGCGCgGGCgGGCGg -3'
miRNA:   3'- cCGCCCGGCUgaCCGUGgCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 3350 0.67 0.468494
Target:  5'- cGGCgucGGcGUCGGCgucGGCGUCGGCgGGCGg -3'
miRNA:   3'- -CCG---CC-CGGCUGa--CCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 3393 0.83 0.04183
Target:  5'- cGCGGGCCGGCucuucuUGcGCGCCGGCgGGCGg -3'
miRNA:   3'- cCGCCCGGCUG------AC-CGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 3428 0.71 0.286364
Target:  5'- cGGCGGGC--GCgGGCGCCcGCgggGGCGa -3'
miRNA:   3'- -CCGCCCGgcUGaCCGUGGcCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 3470 0.72 0.244923
Target:  5'- uGCGGGCCGcGCgggcGGCGUCGGCgucGGCGu -3'
miRNA:   3'- cCGCCCGGC-UGa---CCGUGGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 3557 0.67 0.442528
Target:  5'- cGGCGGcGCCGACggaGcGCACCuGCcgcgGGCn -3'
miRNA:   3'- -CCGCC-CGGCUGa--C-CGUGGcCGa---CCGc -5'
31028 5' -64.9 NC_006560.1 + 3590 0.71 0.280121
Target:  5'- uGCGGGCCagcagcggcgcGGC-GGCGCCGGCgacgaGGCc -3'
miRNA:   3'- cCGCCCGG-----------CUGaCCGUGGCCGa----CCGc -5'
31028 5' -64.9 NC_006560.1 + 3756 0.76 0.126342
Target:  5'- cGCGGGCgCGGC-GGCGCCGcGC-GGCGg -3'
miRNA:   3'- cCGCCCG-GCUGaCCGUGGC-CGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.