miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 104423 1.08 0.000542
Target:  5'- uGGCGGGCCGACUGGCACCGGCUGGCGc -3'
miRNA:   3'- -CCGCCCGGCUGACCGUGGCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 3393 0.83 0.04183
Target:  5'- cGCGGGCCGGCucuucuUGcGCGCCGGCgGGCGg -3'
miRNA:   3'- cCGCCCGGCUG------AC-CGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 20961 0.81 0.052502
Target:  5'- cGGCGGGCCGGCcgcGGCgccGCCGGCUuuaugucGGCGg -3'
miRNA:   3'- -CCGCCCGGCUGa--CCG---UGGCCGA-------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 15721 0.8 0.064484
Target:  5'- cGGCGGGCCGGCacGGgGCCGGCacgccgggGGCGc -3'
miRNA:   3'- -CCGCCCGGCUGa-CCgUGGCCGa-------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 3321 0.8 0.06956
Target:  5'- cGCGGGCCGGg-GGCGCgGGCgGGCGg -3'
miRNA:   3'- cCGCCCGGCUgaCCGUGgCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 24096 0.79 0.071336
Target:  5'- cGGCGGGcCCGACccccGCGgCGGCUGGCGc -3'
miRNA:   3'- -CCGCCC-GGCUGac--CGUgGCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 53832 0.79 0.07502
Target:  5'- cGGCGGGCCGGCccGG-GCCGGCcGGCa -3'
miRNA:   3'- -CCGCCCGGCUGa-CCgUGGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 142295 0.79 0.078886
Target:  5'- cGGCGGGCgCGGCcGGCGCCGGCcgcUGGa- -3'
miRNA:   3'- -CCGCCCG-GCUGaCCGUGGCCG---ACCgc -5'
31028 5' -64.9 NC_006560.1 + 74079 0.79 0.080889
Target:  5'- aGGCcccGGCCGAcCUGGCGgcCUGGCUGGCGu -3'
miRNA:   3'- -CCGc--CCGGCU-GACCGU--GGCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 130618 0.78 0.087196
Target:  5'- cGCGcGGCUGGCgugGGC-CCGGCUGGCc -3'
miRNA:   3'- cCGC-CCGGCUGa--CCGuGGCCGACCGc -5'
31028 5' -64.9 NC_006560.1 + 133540 0.78 0.091657
Target:  5'- gGGCGGggaGCCGGC-GGCGCgCGGCgUGGCGg -3'
miRNA:   3'- -CCGCC---CGGCUGaCCGUG-GCCG-ACCGC- -5'
31028 5' -64.9 NC_006560.1 + 130074 0.77 0.098512
Target:  5'- aGGCGGcGCCGcGCgggGGCGCCaugggcgaggacgGGCUGGCGu -3'
miRNA:   3'- -CCGCC-CGGC-UGa--CCGUGG-------------CCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 15782 0.77 0.098757
Target:  5'- cGgGGGCCGGCagggcccGGCGCCGGC-GGCGa -3'
miRNA:   3'- cCgCCCGGCUGa------CCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 146523 0.76 0.120307
Target:  5'- gGGCGGGCCGGCgcgucggggGGCGCgGGCa-GCGa -3'
miRNA:   3'- -CCGCCCGGCUGa--------CCGUGgCCGacCGC- -5'
31028 5' -64.9 NC_006560.1 + 43353 0.76 0.120307
Target:  5'- cGCGGGCCcGCgGGCguACUGGCUGGUGc -3'
miRNA:   3'- cCGCCCGGcUGaCCG--UGGCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 3756 0.76 0.126342
Target:  5'- cGCGGGCgCGGC-GGCGCCGcGC-GGCGg -3'
miRNA:   3'- cCGCCCG-GCUGaCCGUGGC-CGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 21032 0.75 0.146164
Target:  5'- gGGCGGGCCGggGCggGGCGCCcGCgcGGCGu -3'
miRNA:   3'- -CCGCCCGGC--UGa-CCGUGGcCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 148516 0.75 0.157107
Target:  5'- cGGCGGuCCGAC-GGCgACUGGCUGGgGu -3'
miRNA:   3'- -CCGCCcGGCUGaCCG-UGGCCGACCgC- -5'
31028 5' -64.9 NC_006560.1 + 1892 0.75 0.157107
Target:  5'- cGCGGG-CGGC-GGCGCCGGCUaccaguccucGGCGg -3'
miRNA:   3'- cCGCCCgGCUGaCCGUGGCCGA----------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 33659 0.74 0.160916
Target:  5'- cGCGGGCCG-CUuaGGCGagcCCGGCgGGCGu -3'
miRNA:   3'- cCGCCCGGCuGA--CCGU---GGCCGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.