miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31029 3' -59.2 NC_006560.1 + 99266 0.67 0.69832
Target:  5'- gUCGCGUacggcugCGgg-UGGGCCGGcGGCUGg -3'
miRNA:   3'- -AGCGCGga-----GUauaGCCCGGCC-UCGAC- -5'
31029 3' -59.2 NC_006560.1 + 53455 0.67 0.69832
Target:  5'- cUGCGCCUCcUGUCGGcGCCGcccGAGg-- -3'
miRNA:   3'- aGCGCGGAGuAUAGCC-CGGC---CUCgac -5'
31029 3' -59.2 NC_006560.1 + 89714 0.67 0.697332
Target:  5'- gUCGCGCCgcUCGUcGUCGGGCUcaccgugGaGAGCg- -3'
miRNA:   3'- -AGCGCGG--AGUA-UAGCCCGG-------C-CUCGac -5'
31029 3' -59.2 NC_006560.1 + 55755 0.67 0.688424
Target:  5'- gUCGCGCCgcgCGUcgacgCGGGugcgcacccgcuCCGGAGCg- -3'
miRNA:   3'- -AGCGCGGa--GUAua---GCCC------------GGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 137404 0.67 0.685446
Target:  5'- gCGCGCCUUcc-UCGGGCgguaccacauccugCGGgAGCUGu -3'
miRNA:   3'- aGCGCGGAGuauAGCCCG--------------GCC-UCGAC- -5'
31029 3' -59.2 NC_006560.1 + 42064 0.68 0.678483
Target:  5'- -gGCgGCCUCcg--CGGGCgGGGGCUc -3'
miRNA:   3'- agCG-CGGAGuauaGCCCGgCCUCGAc -5'
31029 3' -59.2 NC_006560.1 + 5143 0.68 0.678483
Target:  5'- cUCGCGgCgCGgggccCGGGCCGGGGCc- -3'
miRNA:   3'- -AGCGCgGaGUaua--GCCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 50686 0.68 0.668506
Target:  5'- cUGCGCCa------GGGCCaGGAGCUGg -3'
miRNA:   3'- aGCGCGGaguauagCCCGG-CCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 79071 0.68 0.668506
Target:  5'- cCGCGCaugCUCAcgUGgauccgCGGGCUggaGGAGCUGg -3'
miRNA:   3'- aGCGCG---GAGU--AUa-----GCCCGG---CCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 35091 0.68 0.665507
Target:  5'- cCGCGCgCUCAccuggggccccccaUGggucCGGGCCGGGGUc- -3'
miRNA:   3'- aGCGCG-GAGU--------------AUa---GCCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 13540 0.68 0.6585
Target:  5'- aCGCGCCgCAcGUCGGGCgGGuccGCc- -3'
miRNA:   3'- aGCGCGGaGUaUAGCCCGgCCu--CGac -5'
31029 3' -59.2 NC_006560.1 + 2987 0.68 0.6585
Target:  5'- aCGCGCaCUCc--UCGGGCuCGGGGacCUGg -3'
miRNA:   3'- aGCGCG-GAGuauAGCCCG-GCCUC--GAC- -5'
31029 3' -59.2 NC_006560.1 + 35164 0.68 0.6585
Target:  5'- aCGCGCC-CGgccgcCGGGCCcGGGGCc- -3'
miRNA:   3'- aGCGCGGaGUaua--GCCCGG-CCUCGac -5'
31029 3' -59.2 NC_006560.1 + 72338 0.68 0.6585
Target:  5'- cCGCGCCUCc-GUCGGGggugUGGGGCg- -3'
miRNA:   3'- aGCGCGGAGuaUAGCCCg---GCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 138297 0.68 0.657498
Target:  5'- cUGCGCCUaccgguUcgUGGGCCGGucggagcgccagcGGCUGg -3'
miRNA:   3'- aGCGCGGAgu----AuaGCCCGGCC-------------UCGAC- -5'
31029 3' -59.2 NC_006560.1 + 118884 0.68 0.648474
Target:  5'- gCGUGCCUC----CGGGCCcuGGGCUGc -3'
miRNA:   3'- aGCGCGGAGuauaGCCCGGc-CUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 35521 0.68 0.638435
Target:  5'- cCGCGCCUCccAUUaGGGCCcgcgcGGGGCg- -3'
miRNA:   3'- aGCGCGGAGuaUAG-CCCGG-----CCUCGac -5'
31029 3' -59.2 NC_006560.1 + 18961 0.68 0.638435
Target:  5'- -gGCGCCgggCGUcgCGGGCCGcGAcGCc- -3'
miRNA:   3'- agCGCGGa--GUAuaGCCCGGC-CU-CGac -5'
31029 3' -59.2 NC_006560.1 + 123420 0.68 0.638435
Target:  5'- gCGCGCCgaguUcgCGGGCCGGcccCUGg -3'
miRNA:   3'- aGCGCGGagu-AuaGCCCGGCCuc-GAC- -5'
31029 3' -59.2 NC_006560.1 + 146806 0.68 0.628392
Target:  5'- cUGCGCCUgGgccCGGGgCGGGGuCUGg -3'
miRNA:   3'- aGCGCGGAgUauaGCCCgGCCUC-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.