miRNA display CGI


Results 21 - 40 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31029 3' -59.2 NC_006560.1 + 34704 0.69 0.578359
Target:  5'- -gGCGUCUCGguggcucucUCGGGCCGGGGg-- -3'
miRNA:   3'- agCGCGGAGUau-------AGCCCGGCCUCgac -5'
31029 3' -59.2 NC_006560.1 + 34992 0.74 0.346002
Target:  5'- -gGCGCCUCGgggccgCGGGCCGGccgGGCg- -3'
miRNA:   3'- agCGCGGAGUaua---GCCCGGCC---UCGac -5'
31029 3' -59.2 NC_006560.1 + 35091 0.68 0.665507
Target:  5'- cCGCGCgCUCAccuggggccccccaUGggucCGGGCCGGGGUc- -3'
miRNA:   3'- aGCGCG-GAGU--------------AUa---GCCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 35164 0.68 0.6585
Target:  5'- aCGCGCC-CGgccgcCGGGCCcGGGGCc- -3'
miRNA:   3'- aGCGCGGaGUaua--GCCCGG-CCUCGac -5'
31029 3' -59.2 NC_006560.1 + 35521 0.68 0.638435
Target:  5'- cCGCGCCUCccAUUaGGGCCcgcgcGGGGCg- -3'
miRNA:   3'- aGCGCGGAGuaUAG-CCCGG-----CCUCGac -5'
31029 3' -59.2 NC_006560.1 + 38135 0.66 0.77849
Target:  5'- aCGaCGCCggcguuuugugggcaUCGUGggagGGGCCGGGGCg- -3'
miRNA:   3'- aGC-GCGG---------------AGUAUag--CCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 39894 0.7 0.519589
Target:  5'- gCGgGUCUCcgucguUCGGGCCGGGGUg- -3'
miRNA:   3'- aGCgCGGAGuau---AGCCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 42064 0.68 0.678483
Target:  5'- -gGCgGCCUCcg--CGGGCgGGGGCUc -3'
miRNA:   3'- agCG-CGGAGuauaGCCCGgCCUCGAc -5'
31029 3' -59.2 NC_006560.1 + 43759 0.71 0.481735
Target:  5'- gUGCGCCcCGUGcgCGGGCCGGcGCc- -3'
miRNA:   3'- aGCGCGGaGUAUa-GCCCGGCCuCGac -5'
31029 3' -59.2 NC_006560.1 + 50256 0.69 0.608321
Target:  5'- cCGCGCCUCcgGgcggcCGGGCuCGGcGCg- -3'
miRNA:   3'- aGCGCGGAGuaUa----GCCCG-GCCuCGac -5'
31029 3' -59.2 NC_006560.1 + 50686 0.68 0.668506
Target:  5'- cUGCGCCa------GGGCCaGGAGCUGg -3'
miRNA:   3'- aGCGCGGaguauagCCCGG-CCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 50837 0.69 0.608321
Target:  5'- -aGCGCCUgCAcgcCGaGGCCGGAGCc- -3'
miRNA:   3'- agCGCGGA-GUauaGC-CCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 53455 0.67 0.69832
Target:  5'- cUGCGCCUCcUGUCGGcGCCGcccGAGg-- -3'
miRNA:   3'- aGCGCGGAGuAUAGCC-CGGC---CUCgac -5'
31029 3' -59.2 NC_006560.1 + 55755 0.67 0.688424
Target:  5'- gUCGCGCCgcgCGUcgacgCGGGugcgcacccgcuCCGGAGCg- -3'
miRNA:   3'- -AGCGCGGa--GUAua---GCCC------------GGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 56532 0.69 0.598307
Target:  5'- gCGCGCCUCccgaccAUggCGGGCgagCGGAGCc- -3'
miRNA:   3'- aGCGCGGAG------UAuaGCCCG---GCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 57759 0.66 0.773917
Target:  5'- gCGCGCgUCGg--CGGGCagcaccaCGGAGCc- -3'
miRNA:   3'- aGCGCGgAGUauaGCCCG-------GCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 58888 0.79 0.175013
Target:  5'- cUCGCGCUUCAUgagcGUCGcGGCgCGGAGCUc -3'
miRNA:   3'- -AGCGCGGAGUA----UAGC-CCG-GCCUCGAc -5'
31029 3' -59.2 NC_006560.1 + 66341 0.66 0.792907
Target:  5'- gCGCgGCCUCGUGg-GGGCCGccGCa- -3'
miRNA:   3'- aGCG-CGGAGUAUagCCCGGCcuCGac -5'
31029 3' -59.2 NC_006560.1 + 67663 0.67 0.69832
Target:  5'- cCGCGCCUCccccgaaagaAUcUCGGGCCGccGCg- -3'
miRNA:   3'- aGCGCGGAG----------UAuAGCCCGGCcuCGac -5'
31029 3' -59.2 NC_006560.1 + 67738 0.67 0.708162
Target:  5'- cCGCGCCUCcccccgaGGagaGCCGGAGCc- -3'
miRNA:   3'- aGCGCGGAGuauag--CC---CGGCCUCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.