miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31029 3' -59.2 NC_006560.1 + 1632 0.75 0.289176
Target:  5'- uUCGCGCCUgucUGUGgcgGGGCCGGGGCg- -3'
miRNA:   3'- -AGCGCGGA---GUAUag-CCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 1959 0.66 0.774834
Target:  5'- gUCGCGCC-Cccca-GGGCgGGGGCg- -3'
miRNA:   3'- -AGCGCGGaGuauagCCCGgCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 2219 0.66 0.774834
Target:  5'- -aGCGCCagGUAgaCGGGCCGcAGCg- -3'
miRNA:   3'- agCGCGGagUAUa-GCCCGGCcUCGac -5'
31029 3' -59.2 NC_006560.1 + 2987 0.68 0.6585
Target:  5'- aCGCGCaCUCc--UCGGGCuCGGGGacCUGg -3'
miRNA:   3'- aGCGCG-GAGuauAGCCCG-GCCUC--GAC- -5'
31029 3' -59.2 NC_006560.1 + 3316 0.66 0.765608
Target:  5'- -aGCGCCg-----CGGGCCgGGGGCg- -3'
miRNA:   3'- agCGCGGaguauaGCCCGG-CCUCGac -5'
31029 3' -59.2 NC_006560.1 + 3411 0.66 0.792907
Target:  5'- gCGCGCCggCGgg-CGGGCgGcGGGCg- -3'
miRNA:   3'- aGCGCGGa-GUauaGCCCGgC-CUCGac -5'
31029 3' -59.2 NC_006560.1 + 4539 0.67 0.737282
Target:  5'- aCGCGCCcCGg---GGGCgGGGGCUc -3'
miRNA:   3'- aGCGCGGaGUauagCCCGgCCUCGAc -5'
31029 3' -59.2 NC_006560.1 + 5143 0.68 0.678483
Target:  5'- cUCGCGgCgCGgggccCGGGCCGGGGCc- -3'
miRNA:   3'- -AGCGCgGaGUaua--GCCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 10475 0.66 0.792907
Target:  5'- aCGcCGCCUCG----GGGCCcGGGGCg- -3'
miRNA:   3'- aGC-GCGGAGUauagCCCGG-CCUCGac -5'
31029 3' -59.2 NC_006560.1 + 11583 0.66 0.783936
Target:  5'- cCGcCGCCUCGgggGUCgcgGGGuuGGGGgaGa -3'
miRNA:   3'- aGC-GCGGAGUa--UAG---CCCggCCUCgaC- -5'
31029 3' -59.2 NC_006560.1 + 13540 0.68 0.6585
Target:  5'- aCGCGCCgCAcGUCGGGCgGGuccGCc- -3'
miRNA:   3'- aGCGCGGaGUaUAGCCCGgCCu--CGac -5'
31029 3' -59.2 NC_006560.1 + 14541 0.66 0.756269
Target:  5'- cCGCGCCUCccuccCGGGagGGGGCg- -3'
miRNA:   3'- aGCGCGGAGuaua-GCCCggCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 15454 0.71 0.47248
Target:  5'- uUCGCGCCgcc---CGGGCCaGGGGCUc -3'
miRNA:   3'- -AGCGCGGaguauaGCCCGG-CCUCGAc -5'
31029 3' -59.2 NC_006560.1 + 17822 0.7 0.529239
Target:  5'- gUCGCGCCcgCGUAgaCGcGG-CGGAGCUGu -3'
miRNA:   3'- -AGCGCGGa-GUAUa-GC-CCgGCCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 18961 0.68 0.638435
Target:  5'- -gGCGCCgggCGUcgCGGGCCGcGAcGCc- -3'
miRNA:   3'- agCGCGGa--GUAuaGCCCGGC-CU-CGac -5'
31029 3' -59.2 NC_006560.1 + 21022 0.67 0.717942
Target:  5'- cCGCcCCgaagggCGGGCCGGGGCg- -3'
miRNA:   3'- aGCGcGGaguauaGCCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 21741 0.66 0.783936
Target:  5'- -gGCGCCgccCGUcgCcGGCCGGGGUa- -3'
miRNA:   3'- agCGCGGa--GUAuaGcCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 22945 0.7 0.548729
Target:  5'- gCGCGCCcgcccCGUGUgGGcGCCcGAGCUGg -3'
miRNA:   3'- aGCGCGGa----GUAUAgCC-CGGcCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 25900 0.67 0.734402
Target:  5'- gCGCGCCUCcgAUgGGGCgcgcgcacgggccgCGGAgGCg- -3'
miRNA:   3'- aGCGCGGAGuaUAgCCCG--------------GCCU-CGac -5'
31029 3' -59.2 NC_006560.1 + 28410 0.69 0.598307
Target:  5'- gUUGgGCCgggg--CGGGCCGGGGCg- -3'
miRNA:   3'- -AGCgCGGaguauaGCCCGGCCUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.