miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31029 3' -59.2 NC_006560.1 + 104069 1.07 0.001804
Target:  5'- gUCGCGCCUCAUAUCGGGCCGGAGCUGc -3'
miRNA:   3'- -AGCGCGGAGUAUAGCCCGGCCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 58888 0.79 0.175013
Target:  5'- cUCGCGCUUCAUgagcGUCGcGGCgCGGAGCUc -3'
miRNA:   3'- -AGCGCGGAGUA----UAGC-CCG-GCCUCGAc -5'
31029 3' -59.2 NC_006560.1 + 78238 0.77 0.207771
Target:  5'- gCGCGCCUgGgGUCGGGCCGG-GCc- -3'
miRNA:   3'- aGCGCGGAgUaUAGCCCGGCCuCGac -5'
31029 3' -59.2 NC_006560.1 + 1632 0.75 0.289176
Target:  5'- uUCGCGCCUgucUGUGgcgGGGCCGGGGCg- -3'
miRNA:   3'- -AGCGCGGA---GUAUag-CCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 81417 0.74 0.309586
Target:  5'- gCGCGCCacCAcccgCGGGCCGGGGCg- -3'
miRNA:   3'- aGCGCGGa-GUaua-GCCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 34992 0.74 0.346002
Target:  5'- -gGCGCCUCGgggccgCGGGCCGGccgGGCg- -3'
miRNA:   3'- agCGCGGAGUaua---GCCCGGCC---UCGac -5'
31029 3' -59.2 NC_006560.1 + 142356 0.74 0.346002
Target:  5'- gCGCGCCUCGg---GGGCCgGGGGCg- -3'
miRNA:   3'- aGCGCGGAGUauagCCCGG-CCUCGac -5'
31029 3' -59.2 NC_006560.1 + 70781 0.72 0.410398
Target:  5'- cCGCGCgCUCGUcgCGGcGCCGGccGGCa- -3'
miRNA:   3'- aGCGCG-GAGUAuaGCC-CGGCC--UCGac -5'
31029 3' -59.2 NC_006560.1 + 15454 0.71 0.47248
Target:  5'- uUCGCGCCgcc---CGGGCCaGGGGCUc -3'
miRNA:   3'- -AGCGCGGaguauaGCCCGG-CCUCGAc -5'
31029 3' -59.2 NC_006560.1 + 43759 0.71 0.481735
Target:  5'- gUGCGCCcCGUGcgCGGGCCGGcGCc- -3'
miRNA:   3'- aGCGCGGaGUAUa-GCCCGGCCuCGac -5'
31029 3' -59.2 NC_006560.1 + 132086 0.71 0.491078
Target:  5'- cUCGCGCCgcgucgugcgCGUGUgcggCGGGCCGGAcgGCg- -3'
miRNA:   3'- -AGCGCGGa---------GUAUA----GCCCGGCCU--CGac -5'
31029 3' -59.2 NC_006560.1 + 39894 0.7 0.519589
Target:  5'- gCGgGUCUCcgucguUCGGGCCGGGGUg- -3'
miRNA:   3'- aGCgCGGAGuau---AGCCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 17822 0.7 0.529239
Target:  5'- gUCGCGCCcgCGUAgaCGcGG-CGGAGCUGu -3'
miRNA:   3'- -AGCGCGGa-GUAUa-GC-CCgGCCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 92495 0.7 0.538954
Target:  5'- gCGCGCCcCAUgGUCGuGCUGGGGCUc -3'
miRNA:   3'- aGCGCGGaGUA-UAGCcCGGCCUCGAc -5'
31029 3' -59.2 NC_006560.1 + 22945 0.7 0.548729
Target:  5'- gCGCGCCcgcccCGUGUgGGcGCCcGAGCUGg -3'
miRNA:   3'- aGCGCGGa----GUAUAgCC-CGGcCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 85550 0.69 0.568437
Target:  5'- -gGCGCC-CGUGggGGGCgGGGGCg- -3'
miRNA:   3'- agCGCGGaGUAUagCCCGgCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 34704 0.69 0.578359
Target:  5'- -gGCGUCUCGguggcucucUCGGGCCGGGGg-- -3'
miRNA:   3'- agCGCGGAGUau-------AGCCCGGCCUCgac -5'
31029 3' -59.2 NC_006560.1 + 95954 0.69 0.578359
Target:  5'- cUCGCGgC-CGg--CGGGCCGGAGUc- -3'
miRNA:   3'- -AGCGCgGaGUauaGCCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 137041 0.69 0.588318
Target:  5'- gUCGCGCCUCAUcuUCGG--CGG-GCUGa -3'
miRNA:   3'- -AGCGCGGAGUAu-AGCCcgGCCuCGAC- -5'
31029 3' -59.2 NC_006560.1 + 93848 0.69 0.597307
Target:  5'- uUCGCGCCgugCGg--CGGcGCCugcgcccGGGGCUGg -3'
miRNA:   3'- -AGCGCGGa--GUauaGCC-CGG-------CCUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.