miRNA display CGI


Results 1 - 20 of 245 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31029 5' -59.1 NC_006560.1 + 104104 1.06 0.002246
Target:  5'- cCACAGACCCCACCCCACCAUCGACCUc -3'
miRNA:   3'- -GUGUCUGGGGUGGGGUGGUAGCUGGA- -5'
31029 5' -59.1 NC_006560.1 + 89233 0.79 0.165272
Target:  5'- gCGCAGgcGCCCCGCCCCGCCc-CGGCCc -3'
miRNA:   3'- -GUGUC--UGGGGUGGGGUGGuaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 695 0.78 0.191627
Target:  5'- uCGCGGGCCCCGuCCCCcCCcgCGGCCc -3'
miRNA:   3'- -GUGUCUGGGGU-GGGGuGGuaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 143549 0.78 0.211186
Target:  5'- uCGCGGACCCCuCCCCuCCAgacagcgCGACCg -3'
miRNA:   3'- -GUGUCUGGGGuGGGGuGGUa------GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 103459 0.77 0.215818
Target:  5'- aCACAGACCCCGCCCagcgugaCAUCAUUGGCa- -3'
miRNA:   3'- -GUGUCUGGGGUGGG-------GUGGUAGCUGga -5'
31029 5' -59.1 NC_006560.1 + 142 0.76 0.27394
Target:  5'- gGCcGGCCCCGCCCCGCgGUccCGGCCc -3'
miRNA:   3'- gUGuCUGGGGUGGGGUGgUA--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 150471 0.76 0.27394
Target:  5'- gGCcGGCCCCGCCCCGCgGUccCGGCCc -3'
miRNA:   3'- gUGuCUGGGGUGGGGUGgUA--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 98830 0.75 0.300214
Target:  5'- gGCAGACCCCAUCCCACCcccUCccCCg -3'
miRNA:   3'- gUGUCUGGGGUGGGGUGGu--AGcuGGa -5'
31029 5' -59.1 NC_006560.1 + 70965 0.75 0.300214
Target:  5'- cCACGGugCCC-CCCgACUcgGUCGACCUg -3'
miRNA:   3'- -GUGUCugGGGuGGGgUGG--UAGCUGGA- -5'
31029 5' -59.1 NC_006560.1 + 22489 0.75 0.30708
Target:  5'- aCGCGGcCCCCGCCggcgccgccgCCGCCGUCGACg- -3'
miRNA:   3'- -GUGUCuGGGGUGG----------GGUGGUAGCUGga -5'
31029 5' -59.1 NC_006560.1 + 33328 0.75 0.314065
Target:  5'- cCGCGGACgCCGCCCCuGCCGccgCGGCCc -3'
miRNA:   3'- -GUGUCUGgGGUGGGG-UGGUa--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 79 0.74 0.320454
Target:  5'- gGCGGGCCCUccccgcgccccgcGCCCCGCCcccgCGGCCg -3'
miRNA:   3'- gUGUCUGGGG-------------UGGGGUGGua--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 150408 0.74 0.320454
Target:  5'- gGCGGGCCCUccccgcgccccgcGCCCCGCCcccgCGGCCg -3'
miRNA:   3'- gUGUCUGGGG-------------UGGGGUGGua--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 145557 0.74 0.32117
Target:  5'- aCGCccGGCCCCGCCCgGCCGU-GACCg -3'
miRNA:   3'- -GUGu-CUGGGGUGGGgUGGUAgCUGGa -5'
31029 5' -59.1 NC_006560.1 + 72765 0.74 0.334998
Target:  5'- gGCGGACCCCcuccccgcggcggACCCCGCC-UCGAgCg -3'
miRNA:   3'- gUGUCUGGGG-------------UGGGGUGGuAGCUgGa -5'
31029 5' -59.1 NC_006560.1 + 30892 0.74 0.350783
Target:  5'- -cCAGACCCCGCCCCGggcCCAggcgcaGACCc -3'
miRNA:   3'- guGUCUGGGGUGGGGU---GGUag----CUGGa -5'
31029 5' -59.1 NC_006560.1 + 142420 0.74 0.358483
Target:  5'- -cCGGACCCCggGCCCCGCCGcccggcgcggCGGCCg -3'
miRNA:   3'- guGUCUGGGG--UGGGGUGGUa---------GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 7448 0.73 0.385536
Target:  5'- cCGCGGACCCCacgucguuacguacaGCCCCccgcGCCAcgCGACCc -3'
miRNA:   3'- -GUGUCUGGGG---------------UGGGG----UGGUa-GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 30391 0.73 0.390448
Target:  5'- aGCGGACCCCACCuuCCGCCcggCGcCCg -3'
miRNA:   3'- gUGUCUGGGGUGG--GGUGGua-GCuGGa -5'
31029 5' -59.1 NC_006560.1 + 118256 0.73 0.407115
Target:  5'- gCGCGGACCgCCGCgCCGCCc-CGGCCg -3'
miRNA:   3'- -GUGUCUGG-GGUGgGGUGGuaGCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.