miRNA display CGI


Results 1 - 20 of 245 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31029 5' -59.1 NC_006560.1 + 79 0.74 0.320454
Target:  5'- gGCGGGCCCUccccgcgccccgcGCCCCGCCcccgCGGCCg -3'
miRNA:   3'- gUGUCUGGGG-------------UGGGGUGGua--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 142 0.76 0.27394
Target:  5'- gGCcGGCCCCGCCCCGCgGUccCGGCCc -3'
miRNA:   3'- gUGuCUGGGGUGGGGUGgUA--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 174 0.68 0.644067
Target:  5'- cCGCGGuCCCgGCCCCGCCggCGuuuuuuuCCg -3'
miRNA:   3'- -GUGUCuGGGgUGGGGUGGuaGCu------GGa -5'
31029 5' -59.1 NC_006560.1 + 404 0.66 0.776047
Target:  5'- cCGCccccCCCCGCCCCGCCugugggguucccCGGCCUc -3'
miRNA:   3'- -GUGucu-GGGGUGGGGUGGua----------GCUGGA- -5'
31029 5' -59.1 NC_006560.1 + 695 0.78 0.191627
Target:  5'- uCGCGGGCCCCGuCCCCcCCcgCGGCCc -3'
miRNA:   3'- -GUGUCUGGGGU-GGGGuGGuaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 731 0.71 0.487276
Target:  5'- cCGCGG-CCCCGuCCCCcCCcgCGGCCc -3'
miRNA:   3'- -GUGUCuGGGGU-GGGGuGGuaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 866 0.7 0.574142
Target:  5'- cCACGGcCCCCGCCCC-CUcgCGcGCCc -3'
miRNA:   3'- -GUGUCuGGGGUGGGGuGGuaGC-UGGa -5'
31029 5' -59.1 NC_006560.1 + 946 0.68 0.653078
Target:  5'- gGCAG-CCCCGCCCC-CgAUCuucacuaGGCCUg -3'
miRNA:   3'- gUGUCuGGGGUGGGGuGgUAG-------CUGGA- -5'
31029 5' -59.1 NC_006560.1 + 1012 0.69 0.624024
Target:  5'- gCGCcGuCUCCGCCCCGCCGUCu-CCg -3'
miRNA:   3'- -GUGuCuGGGGUGGGGUGGUAGcuGGa -5'
31029 5' -59.1 NC_006560.1 + 1395 0.71 0.515633
Target:  5'- cCGCGGcCCUCGCCCC-CCG-CGGCCc -3'
miRNA:   3'- -GUGUCuGGGGUGGGGuGGUaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 4183 0.67 0.751917
Target:  5'- -cCAGGCCCCAgCCgaagCGCCcggCGGCCa -3'
miRNA:   3'- guGUCUGGGGUgGG----GUGGua-GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 5006 0.68 0.664073
Target:  5'- gCGgGGugCCCGuCgCCGCCGUCGuCCUc -3'
miRNA:   3'- -GUgUCugGGGU-GgGGUGGUAGCuGGA- -5'
31029 5' -59.1 NC_006560.1 + 6338 0.66 0.761287
Target:  5'- gCGCGGgcGCCCCGCCCCgGCC--CGcCCUu -3'
miRNA:   3'- -GUGUC--UGGGGUGGGG-UGGuaGCuGGA- -5'
31029 5' -59.1 NC_006560.1 + 6370 0.67 0.703724
Target:  5'- gGCGGGCCcgCCGCCCCGCCcuUCccccGCCg -3'
miRNA:   3'- gUGUCUGG--GGUGGGGUGGu-AGc---UGGa -5'
31029 5' -59.1 NC_006560.1 + 6846 0.66 0.788704
Target:  5'- uCACcucGGCCUCugCCCGCCcgCGcCCc -3'
miRNA:   3'- -GUGu--CUGGGGugGGGUGGuaGCuGGa -5'
31029 5' -59.1 NC_006560.1 + 7448 0.73 0.385536
Target:  5'- cCGCGGACCCCacgucguuacguacaGCCCCccgcGCCAcgCGACCc -3'
miRNA:   3'- -GUGUCUGGGG---------------UGGGG----UGGUa-GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 7672 0.69 0.634046
Target:  5'- gGCcGGCCgCGCCCCgagACCAcgCGACCg -3'
miRNA:   3'- gUGuCUGGgGUGGGG---UGGUa-GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 8099 0.72 0.415613
Target:  5'- gGCAG-CCCCGCgccgaCCGCCGccUCGGCCUg -3'
miRNA:   3'- gUGUCuGGGGUGg----GGUGGU--AGCUGGA- -5'
31029 5' -59.1 NC_006560.1 + 8231 0.67 0.751917
Target:  5'- uCGCGGGCuuuCCCuCCCC-CCAacgCGACCg -3'
miRNA:   3'- -GUGUCUG---GGGuGGGGuGGUa--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 8461 0.67 0.723235
Target:  5'- uCGCGGuuUCCAcCCCCGCCAcaGACCa -3'
miRNA:   3'- -GUGUCugGGGU-GGGGUGGUagCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.