miRNA display CGI


Results 21 - 40 of 422 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 3590 0.68 0.797186
Target:  5'- -uGCGggcCAGCAGCGGcgcgGCgGCGCcggcgacgagGCCCa -3'
miRNA:   3'- guCGCa--GUCGUCGCU----UGgCGUG----------UGGG- -5'
31030 3' -56.9 NC_006560.1 + 3631 0.67 0.831752
Target:  5'- aCGGCGcgcaCGGCGGCGAcgGCgGCcucgGCGCCg -3'
miRNA:   3'- -GUCGCa---GUCGUCGCU--UGgCG----UGUGGg -5'
31030 3' -56.9 NC_006560.1 + 3699 0.76 0.360104
Target:  5'- gAGCGUCAGC-GCG--UCGCGCACCa -3'
miRNA:   3'- gUCGCAGUCGuCGCuuGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 3766 0.69 0.701686
Target:  5'- gCGGCGcCGcGCGGCgGGACCGCgGCGCgCg -3'
miRNA:   3'- -GUCGCaGU-CGUCG-CUUGGCG-UGUGgG- -5'
31030 3' -56.9 NC_006560.1 + 3810 0.68 0.750727
Target:  5'- gGGCa-CGGCGGCGAggucGCCGCcgaaGCCCu -3'
miRNA:   3'- gUCGcaGUCGUCGCU----UGGCGug--UGGG- -5'
31030 3' -56.9 NC_006560.1 + 3889 0.73 0.472636
Target:  5'- gCGGCGUCGGCGGCGucgGCgGCgucgGCGuCCCc -3'
miRNA:   3'- -GUCGCAGUCGUCGCu--UGgCG----UGU-GGG- -5'
31030 3' -56.9 NC_006560.1 + 3947 0.7 0.681601
Target:  5'- -cGCgGUCGGCGGCGAggGCgGC-CGCCa -3'
miRNA:   3'- guCG-CAGUCGUCGCU--UGgCGuGUGGg -5'
31030 3' -56.9 NC_006560.1 + 4053 0.71 0.600312
Target:  5'- gCGGCGccggccgCGGCGGCGuucUCGCGCGCCa -3'
miRNA:   3'- -GUCGCa------GUCGUCGCuu-GGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 4164 0.72 0.529241
Target:  5'- aCGGCGgCGGCGGCGugggccaggccccAGCCGaaGCGCCCg -3'
miRNA:   3'- -GUCGCaGUCGUCGC-------------UUGGCg-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 4213 0.68 0.797186
Target:  5'- uGGCGUagccCAGguGCGGcACgGCGCGCgCg -3'
miRNA:   3'- gUCGCA----GUCguCGCU-UGgCGUGUGgG- -5'
31030 3' -56.9 NC_006560.1 + 4463 0.66 0.870871
Target:  5'- gUAGCGcCGGC-GCGccuCCGC-CACCUc -3'
miRNA:   3'- -GUCGCaGUCGuCGCuu-GGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 4632 0.71 0.620646
Target:  5'- uCGGCGUCcaggggcacgGGCcGCG-GCCGCGCGgCCg -3'
miRNA:   3'- -GUCGCAG----------UCGuCGCuUGGCGUGUgGG- -5'
31030 3' -56.9 NC_006560.1 + 4698 0.7 0.681601
Target:  5'- aCGGCGgcgcgcgcgCGGCGGCGc-UCGCuGCGCCCg -3'
miRNA:   3'- -GUCGCa--------GUCGUCGCuuGGCG-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 4752 0.67 0.80607
Target:  5'- gCGGCGgcccgCGGCGGCG-GCgGCGCGgggUCCg -3'
miRNA:   3'- -GUCGCa----GUCGUCGCuUGgCGUGU---GGG- -5'
31030 3' -56.9 NC_006560.1 + 4887 0.73 0.482025
Target:  5'- gCGGCGcCGGCGG-GGGCCGCgucGCGCUCg -3'
miRNA:   3'- -GUCGCaGUCGUCgCUUGGCG---UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 5103 0.66 0.862694
Target:  5'- cCGGgGUCGGCGGgGGcgcggcgucgaugACC-CACACCg -3'
miRNA:   3'- -GUCgCAGUCGUCgCU-------------UGGcGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 5184 0.67 0.805188
Target:  5'- gCGGCGaCGGCGGCcccGACgGCggggacaGCGCCCg -3'
miRNA:   3'- -GUCGCaGUCGUCGc--UUGgCG-------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 5343 0.72 0.570003
Target:  5'- cCGGCGUCcuCGGCGGGCCGUcguccggguccgGCgaGCCCg -3'
miRNA:   3'- -GUCGCAGucGUCGCUUGGCG------------UG--UGGG- -5'
31030 3' -56.9 NC_006560.1 + 5519 0.67 0.80607
Target:  5'- gAGgGUCGGCGGCGgu-CGCGCucuUCCg -3'
miRNA:   3'- gUCgCAGUCGUCGCuugGCGUGu--GGG- -5'
31030 3' -56.9 NC_006560.1 + 5674 0.68 0.750727
Target:  5'- gGGCG-CGGgGGCGGccgGCgGCGcCGCCCg -3'
miRNA:   3'- gUCGCaGUCgUCGCU---UGgCGU-GUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.