miRNA display CGI


Results 1 - 20 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 519 0.74 0.454142
Target:  5'- gGGCGcCggggGGCGGCGGccgGCCGCGC-CCCg -3'
miRNA:   3'- gUCGCaG----UCGUCGCU---UGGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 550 0.67 0.823361
Target:  5'- -cGgGUCccCGGCGucccCCGCGCGCCCc -3'
miRNA:   3'- guCgCAGucGUCGCuu--GGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 1513 0.66 0.855818
Target:  5'- gAGCG-CGuGCAuCGGGCCccgggcGCGCGCCCg -3'
miRNA:   3'- gUCGCaGU-CGUcGCUUGG------CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 2021 0.73 0.51071
Target:  5'- uCGGCGUCggcgAGCAGCGuguCgGCGCGgCCg -3'
miRNA:   3'- -GUCGCAG----UCGUCGCuu-GgCGUGUgGG- -5'
31030 3' -56.9 NC_006560.1 + 2070 0.74 0.436047
Target:  5'- gCGGCG-CGGCGGCGGgguCCGgGgGCCCg -3'
miRNA:   3'- -GUCGCaGUCGUCGCUu--GGCgUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 2096 0.67 0.814797
Target:  5'- nCGGCGUCGgcgcGCAGCacGAGCgGCGCGgCg -3'
miRNA:   3'- -GUCGCAGU----CGUCG--CUUGgCGUGUgGg -5'
31030 3' -56.9 NC_006560.1 + 2169 0.68 0.769683
Target:  5'- gCAGCG-CGGCGGgcaGGGCCuCGgGCCCg -3'
miRNA:   3'- -GUCGCaGUCGUCg--CUUGGcGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 2217 0.75 0.384374
Target:  5'- cCAGCGcCAgGUAGaCGGGCCGCagcggcGCACCCa -3'
miRNA:   3'- -GUCGCaGU-CGUC-GCUUGGCG------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 2308 0.69 0.72154
Target:  5'- -cGCGcCGGCGGCG-GCCGCcucGCGCgCg -3'
miRNA:   3'- guCGCaGUCGUCGCuUGGCG---UGUGgG- -5'
31030 3' -56.9 NC_006560.1 + 2335 0.67 0.80607
Target:  5'- gGGCGagUCGGCGGCGcGGCCGUcgaGCGCg- -3'
miRNA:   3'- gUCGC--AGUCGUCGC-UUGGCG---UGUGgg -5'
31030 3' -56.9 NC_006560.1 + 2707 0.77 0.31485
Target:  5'- gCGGCGgcCGGCGGCGGccGCCaGCAgGCCCa -3'
miRNA:   3'- -GUCGCa-GUCGUCGCU--UGG-CGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 2747 0.67 0.818243
Target:  5'- aCGGCGcCGGCgaaGGCcaggucgcgcguggaGAGCaggaGCACGCCCu -3'
miRNA:   3'- -GUCGCaGUCG---UCG---------------CUUGg---CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 3025 0.69 0.741089
Target:  5'- gCGGCGgcgCGgcGCAGCGGGCCcgagGCGCggagcgGCCCg -3'
miRNA:   3'- -GUCGCa--GU--CGUCGCUUGG----CGUG------UGGG- -5'
31030 3' -56.9 NC_006560.1 + 3099 0.71 0.610471
Target:  5'- gCAGCGcgCGGcCAGCGAgGCCaGCGCGCgCg -3'
miRNA:   3'- -GUCGCa-GUC-GUCGCU-UGG-CGUGUGgG- -5'
31030 3' -56.9 NC_006560.1 + 3221 0.71 0.610471
Target:  5'- gGGCGgCGGCGGCGGGCgGCggcgugugggcGgGCCCg -3'
miRNA:   3'- gUCGCaGUCGUCGCUUGgCG-----------UgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 3300 0.7 0.651191
Target:  5'- gGGCGggcgGGCGGUGAgcGCCGCGgGCCg -3'
miRNA:   3'- gUCGCag--UCGUCGCU--UGGCGUgUGGg -5'
31030 3' -56.9 NC_006560.1 + 3367 0.72 0.529241
Target:  5'- uCGGCGUCGGCgGGCGGGCgggcgggCGCGgGCCg -3'
miRNA:   3'- -GUCGCAGUCG-UCGCUUG-------GCGUgUGGg -5'
31030 3' -56.9 NC_006560.1 + 3416 0.77 0.287145
Target:  5'- cCGGCGggcgGGCGGCGGGCgCGgGCGCCCg -3'
miRNA:   3'- -GUCGCag--UCGUCGCUUG-GCgUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 3496 0.74 0.427157
Target:  5'- uCGGCGUCGGCGGCGuccagcaggGGgCGCAgGCUCu -3'
miRNA:   3'- -GUCGCAGUCGUCGC---------UUgGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 3550 0.74 0.436047
Target:  5'- uCGGCGgCGGCGGCGccGACggaGCGCACCUg -3'
miRNA:   3'- -GUCGCaGUCGUCGC--UUGg--CGUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.