miRNA display CGI


Results 1 - 20 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 103601 1.12 0.001487
Target:  5'- gCAGCGUCAGCAGCGAACCGCACACCCg -3'
miRNA:   3'- -GUCGCAGUCGUCGCUUGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 93674 0.82 0.155832
Target:  5'- cCGGCGUCGGCGGCGGacgacGCCGCGguCUCg -3'
miRNA:   3'- -GUCGCAGUCGUCGCU-----UGGCGUguGGG- -5'
31030 3' -56.9 NC_006560.1 + 43302 0.81 0.168127
Target:  5'- gCGGaCGUCGGCGGCGAugCGC-CGCUCg -3'
miRNA:   3'- -GUC-GCAGUCGUCGCUugGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 14089 0.8 0.20524
Target:  5'- gCAGCGUCGGCAGCaccgguggaGGACgGCccccGCGCCCa -3'
miRNA:   3'- -GUCGCAGUCGUCG---------CUUGgCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 18923 0.8 0.20524
Target:  5'- cCGGCGUCcgugcGCGGCGuGCCGCGCgggGCCCg -3'
miRNA:   3'- -GUCGCAGu----CGUCGCuUGGCGUG---UGGG- -5'
31030 3' -56.9 NC_006560.1 + 52542 0.79 0.220896
Target:  5'- gGGCGUCgAGCGGCGGccucuGCCGCGcCAUCCu -3'
miRNA:   3'- gUCGCAG-UCGUCGCU-----UGGCGU-GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 37815 0.79 0.226337
Target:  5'- gCAGCucCGGCAGCGAcgGCCGCACGCUg -3'
miRNA:   3'- -GUCGcaGUCGUCGCU--UGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 15798 0.78 0.249242
Target:  5'- cCGGCGcCGGCGGCG-ACCGCGgccgacagcCGCCCg -3'
miRNA:   3'- -GUCGCaGUCGUCGCuUGGCGU---------GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 145869 0.78 0.249242
Target:  5'- -cGCGUCGcGCGGCGAGCCcCACcCCCg -3'
miRNA:   3'- guCGCAGU-CGUCGCUUGGcGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 127186 0.78 0.25526
Target:  5'- cCGGCGgCGGUAGCGcGCCGUcgucGCGCCCa -3'
miRNA:   3'- -GUCGCaGUCGUCGCuUGGCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 15895 0.78 0.261396
Target:  5'- cCGGCGcCAGCAGCGAGgCGUuCACCa -3'
miRNA:   3'- -GUCGCaGUCGUCGCUUgGCGuGUGGg -5'
31030 3' -56.9 NC_006560.1 + 22652 0.78 0.274029
Target:  5'- gGGCGUCGccgccgggcGCAGCGAgcgccGCCGCGCGCgCg -3'
miRNA:   3'- gUCGCAGU---------CGUCGCU-----UGGCGUGUGgG- -5'
31030 3' -56.9 NC_006560.1 + 17352 0.77 0.287145
Target:  5'- cCGGCGUCAgggcGCGGUGGAUCGCGaACCCc -3'
miRNA:   3'- -GUCGCAGU----CGUCGCUUGGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 89522 0.77 0.287145
Target:  5'- -cGCGggAGCAGCGAccccggcacCCGCGCGCCCg -3'
miRNA:   3'- guCGCagUCGUCGCUu--------GGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 3416 0.77 0.287145
Target:  5'- cCGGCGggcgGGCGGCGGGCgCGgGCGCCCg -3'
miRNA:   3'- -GUCGCag--UCGUCGCUUG-GCgUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 65417 0.77 0.31485
Target:  5'- uCGGCGgaacgCGGgAGCGGACCGgGCGCCg -3'
miRNA:   3'- -GUCGCa----GUCgUCGCUUGGCgUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 65160 0.77 0.31485
Target:  5'- -cGCGUCGGCGGUGGugAUCGCGguCCCg -3'
miRNA:   3'- guCGCAGUCGUCGCU--UGGCGUguGGG- -5'
31030 3' -56.9 NC_006560.1 + 2707 0.77 0.31485
Target:  5'- gCGGCGgcCGGCGGCGGccGCCaGCAgGCCCa -3'
miRNA:   3'- -GUCGCa-GUCGUCGCU--UGG-CGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 22801 0.76 0.329443
Target:  5'- aCGGCuacGcCAGCGGCGAGCC-CugGCCCg -3'
miRNA:   3'- -GUCG---CaGUCGUCGCUUGGcGugUGGG- -5'
31030 3' -56.9 NC_006560.1 + 83446 0.76 0.344528
Target:  5'- uCGGCGcggCGGCGGCGAgagcuGCUGCACGCgCg -3'
miRNA:   3'- -GUCGCa--GUCGUCGCU-----UGGCGUGUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.