miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 5' -54.8 NC_006560.1 + 103635 1.08 0.004558
Target:  5'- gGUAAACUCCCGAAUCUCCCCCGCCAGc -3'
miRNA:   3'- -CAUUUGAGGGCUUAGAGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 57870 0.76 0.444809
Target:  5'- -gGGGCUCCCGGggC-CCCCCGCgGGu -3'
miRNA:   3'- caUUUGAGGGCUuaGaGGGGGCGgUC- -5'
31030 5' -54.8 NC_006560.1 + 29631 0.75 0.491938
Target:  5'- -gGAGCUCCUGAugCUCUCCCGCUAc -3'
miRNA:   3'- caUUUGAGGGCUuaGAGGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 29771 0.75 0.518329
Target:  5'- ----cCUCCCGGGggccgcgggcccccUCUCCCCCGCCc- -3'
miRNA:   3'- cauuuGAGGGCUU--------------AGAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 112406 0.74 0.561437
Target:  5'- -cGGGCcCCCGGGcCcCCCCCGCCGGg -3'
miRNA:   3'- caUUUGaGGGCUUaGaGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 147194 0.74 0.561437
Target:  5'- ----cCUCCCc---CUCCCCCGCCGGa -3'
miRNA:   3'- cauuuGAGGGcuuaGAGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 29356 0.73 0.581832
Target:  5'- -gGAGC-CCCGggUCgcUCCUCCGcCCAGg -3'
miRNA:   3'- caUUUGaGGGCuuAG--AGGGGGC-GGUC- -5'
31030 5' -54.8 NC_006560.1 + 78783 0.73 0.602374
Target:  5'- -gGAGCUCCCGuucGUgUCCCCCGgCGu -3'
miRNA:   3'- caUUUGAGGGCu--UAgAGGGGGCgGUc -5'
31030 5' -54.8 NC_006560.1 + 61198 0.72 0.643665
Target:  5'- uGUGGACgaccgugCCCGcucCUCCCCCGCCc- -3'
miRNA:   3'- -CAUUUGa------GGGCuuaGAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 24441 0.72 0.653985
Target:  5'- -gGAGCUCggCGGcGUCUCCCCCGCCc- -3'
miRNA:   3'- caUUUGAGg-GCU-UAGAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 142017 0.72 0.674563
Target:  5'- ---cGCUCCCccccggCUCCCCCGCCc- -3'
miRNA:   3'- cauuUGAGGGcuua--GAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 22474 0.71 0.694999
Target:  5'- -cGGAC-CCCGAGcgCgacgcggCCCCCGCCGGc -3'
miRNA:   3'- caUUUGaGGGCUUa-Ga------GGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 45734 0.71 0.694999
Target:  5'- -cAGGCgcgCCgCGGGcUCgcgCCCCCGCCAGg -3'
miRNA:   3'- caUUUGa--GG-GCUU-AGa--GGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 110617 0.71 0.694999
Target:  5'- --cGGCUCCCGcGUCcacgCCCCCGCUc- -3'
miRNA:   3'- cauUUGAGGGCuUAGa---GGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 126384 0.71 0.735154
Target:  5'- -gGGGCgccgCCCGggUCUCCgCCGCg-- -3'
miRNA:   3'- caUUUGa---GGGCuuAGAGGgGGCGguc -5'
31030 5' -54.8 NC_006560.1 + 113640 0.7 0.744989
Target:  5'- aUGAACgcgCCCGg--CUUCCCCGCgGGg -3'
miRNA:   3'- cAUUUGa--GGGCuuaGAGGGGGCGgUC- -5'
31030 5' -54.8 NC_006560.1 + 42817 0.7 0.754723
Target:  5'- ---cGCgCCCccGUCUCCCUCGCCGGc -3'
miRNA:   3'- cauuUGaGGGcuUAGAGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 105990 0.7 0.754723
Target:  5'- ---uGCUCCCGGg---CCCgCCGCCGGg -3'
miRNA:   3'- cauuUGAGGGCUuagaGGG-GGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 8260 0.7 0.77385
Target:  5'- cGUGcGC-CCCGugccCUCCCCCGCCc- -3'
miRNA:   3'- -CAUuUGaGGGCuua-GAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 41551 0.7 0.783225
Target:  5'- -gGAcCUCCgCGAggCUCUCCCGCCu- -3'
miRNA:   3'- caUUuGAGG-GCUuaGAGGGGGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.