miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 5' -54.8 NC_006560.1 + 1210 0.66 0.920707
Target:  5'- -cAGGCUcCCCGGGggCggggCCCCUGCCGc -3'
miRNA:   3'- caUUUGA-GGGCUUa-Ga---GGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 1270 0.66 0.92623
Target:  5'- -gAAGCcCCCGcgaagCCCCCGCCGc -3'
miRNA:   3'- caUUUGaGGGCuuagaGGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 6381 0.66 0.941336
Target:  5'- ---cGC-CCCGcccUUCCCCCGCCGa -3'
miRNA:   3'- cauuUGaGGGCuuaGAGGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 7387 0.66 0.936544
Target:  5'- -aGAGC-CCCGAccucCUCgagagCCCCGCCGGc -3'
miRNA:   3'- caUUUGaGGGCUua--GAG-----GGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 8260 0.7 0.77385
Target:  5'- cGUGcGC-CCCGugccCUCCCCCGCCc- -3'
miRNA:   3'- -CAUuUGaGGGCuua-GAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 11516 0.68 0.88253
Target:  5'- -gAGGCgcucgucgCCCGA----CCCCCGCCGGg -3'
miRNA:   3'- caUUUGa-------GGGCUuagaGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 15374 0.69 0.819253
Target:  5'- -gGGACUCCCccccgcCUCCUCCGCCu- -3'
miRNA:   3'- caUUUGAGGGcuua--GAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 17024 0.66 0.925145
Target:  5'- uUGAugUCCCGGuggaugaugCCCUCGCCGu -3'
miRNA:   3'- cAUUugAGGGCUuaga-----GGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 18058 0.66 0.945888
Target:  5'- -cAAGgUCCCGccguguuucucGGUC-CCCCCGCCc- -3'
miRNA:   3'- caUUUgAGGGC-----------UUAGaGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 20115 0.67 0.914942
Target:  5'- cUGGACUCCgGAAaaacgaCCCCCGCgCGGc -3'
miRNA:   3'- cAUUUGAGGgCUUaga---GGGGGCG-GUC- -5'
31030 5' -54.8 NC_006560.1 + 22167 0.66 0.92623
Target:  5'- -gAGACggCCCGGGcgCUgUCCCCGCCGu -3'
miRNA:   3'- caUUUGa-GGGCUUa-GA-GGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 22474 0.71 0.694999
Target:  5'- -cGGAC-CCCGAGcgCgacgcggCCCCCGCCGGc -3'
miRNA:   3'- caUUUGaGGGCUUa-Ga------GGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 24441 0.72 0.653985
Target:  5'- -gGAGCUCggCGGcGUCUCCCCCGCCc- -3'
miRNA:   3'- caUUUGAGg-GCU-UAGAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 26443 0.68 0.875353
Target:  5'- -gGGGCUgCCGGG-CUCCCcuaggccuccaCCGCCGGg -3'
miRNA:   3'- caUUUGAgGGCUUaGAGGG-----------GGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 29356 0.73 0.581832
Target:  5'- -gGAGC-CCCGggUCgcUCCUCCGcCCAGg -3'
miRNA:   3'- caUUUGaGGGCuuAG--AGGGGGC-GGUC- -5'
31030 5' -54.8 NC_006560.1 + 29631 0.75 0.491938
Target:  5'- -gGAGCUCCUGAugCUCUCCCGCUAc -3'
miRNA:   3'- caUUUGAGGGCUuaGAGGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 29771 0.75 0.518329
Target:  5'- ----cCUCCCGGGggccgcgggcccccUCUCCCCCGCCc- -3'
miRNA:   3'- cauuuGAGGGCUU--------------AGAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 36599 0.69 0.805144
Target:  5'- uGUGAGCcgCUCGGAUCUgcgucugcccgcgucCCCCCggcGCCAGg -3'
miRNA:   3'- -CAUUUGa-GGGCUUAGA---------------GGGGG---CGGUC- -5'
31030 5' -54.8 NC_006560.1 + 38214 0.69 0.801552
Target:  5'- -cGGGCgCCCG--UCUCCCCCcgccGCCGGg -3'
miRNA:   3'- caUUUGaGGGCuuAGAGGGGG----CGGUC- -5'
31030 5' -54.8 NC_006560.1 + 41551 0.7 0.783225
Target:  5'- -gGAcCUCCgCGAggCUCUCCCGCCu- -3'
miRNA:   3'- caUUuGAGG-GCUuaGAGGGGGCGGuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.