miRNA display CGI


Results 1 - 20 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31031 3' -59.1 NC_006560.1 + 102967 1.08 0.001902
Target:  5'- uCGGGUCGCGAGACGGGGACGCAGAAGa -3'
miRNA:   3'- -GCCCAGCGCUCUGCCCCUGCGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 62360 0.87 0.056535
Target:  5'- cCGGGUCG-GGGACGGGGuCGCGGggGg -3'
miRNA:   3'- -GCCCAGCgCUCUGCCCCuGCGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 1860 0.84 0.085646
Target:  5'- gCGGGUCGCG-GGCGGGGGuCGCGGgcGg -3'
miRNA:   3'- -GCCCAGCGCuCUGCCCCU-GCGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 55323 0.82 0.128689
Target:  5'- gGGGUCGCGGGGCGGGGGCucgugGCGGccGu -3'
miRNA:   3'- gCCCAGCGCUCUGCCCCUG-----CGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 35535 0.8 0.152855
Target:  5'- aGGGcccgCGCGGGGCGGGGgggccggcaauuaGCGCGGAGGa -3'
miRNA:   3'- gCCCa---GCGCUCUGCCCC-------------UGCGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 54385 0.8 0.15707
Target:  5'- gGGGgaaaCGCGcGGGCGGGGGCGCGGGAc -3'
miRNA:   3'- gCCCa---GCGC-UCUGCCCCUGCGUCUUc -5'
31031 3' -59.1 NC_006560.1 + 26657 0.8 0.169101
Target:  5'- gGGGcCGCGggggGGACGGGGcCGCGGggGg -3'
miRNA:   3'- gCCCaGCGC----UCUGCCCCuGCGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 147897 0.8 0.173291
Target:  5'- aCGGcGcagaccUCGCGGGGCGGGGGCGgGGGAGa -3'
miRNA:   3'- -GCC-C------AGCGCUCUGCCCCUGCgUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 148390 0.79 0.190991
Target:  5'- uGGGUC-CGGGgaGCGGGGACGCGGGGc -3'
miRNA:   3'- gCCCAGcGCUC--UGCCCCUGCGUCUUc -5'
31031 3' -59.1 NC_006560.1 + 8864 0.78 0.205289
Target:  5'- gGGGUCGgucugGGGugGGGGAgGCGGggGg -3'
miRNA:   3'- gCCCAGCg----CUCugCCCCUgCGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 27282 0.78 0.210257
Target:  5'- gCGGGg-GCGGGGCGcGGGGCGCGGGGa -3'
miRNA:   3'- -GCCCagCGCUCUGC-CCCUGCGUCUUc -5'
31031 3' -59.1 NC_006560.1 + 132337 0.78 0.210257
Target:  5'- aCGcGGUCGCGGGGCGGGGGuCGCGu--- -3'
miRNA:   3'- -GC-CCAGCGCUCUGCCCCU-GCGUcuuc -5'
31031 3' -59.1 NC_006560.1 + 26626 0.78 0.225786
Target:  5'- gGGGggGgGGGACGGGGcCGCGGggGg -3'
miRNA:   3'- gCCCagCgCUCUGCCCCuGCGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 35676 0.78 0.225786
Target:  5'- gGGGcCGCGGGGCGGGGGagcCGgGGggGa -3'
miRNA:   3'- gCCCaGCGCUCUGCCCCU---GCgUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 82795 0.78 0.231175
Target:  5'- gCGGGcgCGCGGGA-GGGGGCGgAGggGa -3'
miRNA:   3'- -GCCCa-GCGCUCUgCCCCUGCgUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 33108 0.78 0.231175
Target:  5'- gGGGUCGCGGGgaaggcggccGCGGGGaagGCGgGGAAGg -3'
miRNA:   3'- gCCCAGCGCUC----------UGCCCC---UGCgUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 85505 0.77 0.247993
Target:  5'- gGGGUCGcCGGGcugcugcccGCGGGGGCGCuuGGggGg -3'
miRNA:   3'- gCCCAGC-GCUC---------UGCCCCUGCG--UCuuC- -5'
31031 3' -59.1 NC_006560.1 + 34609 0.77 0.247993
Target:  5'- cCGGGggguggccgCGCGGcuCGGGGGCGCGGAGGu -3'
miRNA:   3'- -GCCCa--------GCGCUcuGCCCCUGCGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 100812 0.77 0.25382
Target:  5'- gCGGGggccauagCGCGGGcGCGGGGGCcgGCGGAGGg -3'
miRNA:   3'- -GCCCa-------GCGCUC-UGCCCCUG--CGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 99883 0.77 0.259759
Target:  5'- gGGGUCGUGGcggcGGCGGGcGGCGCGGGGu -3'
miRNA:   3'- gCCCAGCGCU----CUGCCC-CUGCGUCUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.