miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31031 3' -59.1 NC_006560.1 + 1860 0.84 0.085646
Target:  5'- gCGGGUCGCG-GGCGGGGGuCGCGGgcGg -3'
miRNA:   3'- -GCCCAGCGCuCUGCCCCU-GCGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 1887 0.7 0.606231
Target:  5'- gGGGUCGCG-GGCGGcGGCGCcGGc- -3'
miRNA:   3'- gCCCAGCGCuCUGCCcCUGCGuCUuc -5'
31031 3' -59.1 NC_006560.1 + 1956 0.76 0.290506
Target:  5'- gGGGUCGCGccccccaGGGCGGGGGCGgGGcucGGGg -3'
miRNA:   3'- gCCCAGCGC-------UCUGCCCCUGCgUC---UUC- -5'
31031 3' -59.1 NC_006560.1 + 2131 0.66 0.788715
Target:  5'- gGGGUC-CGgcucGGGCaGGGcgcgcGCGCAGAAGg -3'
miRNA:   3'- gCCCAGcGC----UCUGcCCC-----UGCGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 3306 0.74 0.362671
Target:  5'- gCGGGcggugagcgcCGCGGGcCGGGGGCGCGGgcGg -3'
miRNA:   3'- -GCCCa---------GCGCUCuGCCCCUGCGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 3430 0.74 0.386373
Target:  5'- gCGGG-CGCGGGcgcccGCGGGGGCG-AGGAGc -3'
miRNA:   3'- -GCCCaGCGCUC-----UGCCCCUGCgUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 3658 0.67 0.761625
Target:  5'- uCGGcGcCGC----CGGGGACGCGGAGGu -3'
miRNA:   3'- -GCC-CaGCGcucuGCCCCUGCGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 4783 0.66 0.788715
Target:  5'- cCGGGUC-CGAGuCGGGGuCGgGGuccGAGu -3'
miRNA:   3'- -GCCCAGcGCUCuGCCCCuGCgUC---UUC- -5'
31031 3' -59.1 NC_006560.1 + 4989 0.72 0.472328
Target:  5'- cCGGGUC-CGAGcCGGGGGCGgGGu-- -3'
miRNA:   3'- -GCCCAGcGCUCuGCCCCUGCgUCuuc -5'
31031 3' -59.1 NC_006560.1 + 5105 0.68 0.714435
Target:  5'- gGGGUCG----GCGGGGGCGCGGc-- -3'
miRNA:   3'- gCCCAGCgcucUGCCCCUGCGUCuuc -5'
31031 3' -59.1 NC_006560.1 + 5151 0.69 0.655724
Target:  5'- gCGGGgCcCGGGcCGGGGcCGCGGggGc -3'
miRNA:   3'- -GCCCaGcGCUCuGCCCCuGCGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 5484 0.66 0.788715
Target:  5'- gCGcGGUCGCGGcgagggucGGCGGcGGuCGCGGcGAGg -3'
miRNA:   3'- -GC-CCAGCGCU--------CUGCC-CCuGCGUC-UUC- -5'
31031 3' -59.1 NC_006560.1 + 6530 0.74 0.36811
Target:  5'- cCGGGaUCGCcucgggggcucgggGGGACGGGGGCuCGGggGg -3'
miRNA:   3'- -GCCC-AGCG--------------CUCUGCCCCUGcGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 6584 0.71 0.518772
Target:  5'- gGGGcUCgGgGGGACGGGGGCuCGGggGc -3'
miRNA:   3'- gCCC-AG-CgCUCUGCCCCUGcGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 6616 0.71 0.518772
Target:  5'- gGGGcUCGgGGGAcCGGGGGCuCGGggGc -3'
miRNA:   3'- gCCC-AGCgCUCU-GCCCCUGcGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 6665 0.68 0.724037
Target:  5'- gGGGcUCGgGGGGacCGGGGGCuCGGggGc -3'
miRNA:   3'- gCCC-AGCgCUCU--GCCCCUGcGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 6715 0.69 0.635928
Target:  5'- gGGGcUCGgGGGGacCGGGGGCuCGGggGg -3'
miRNA:   3'- gCCC-AGCgCUCU--GCCCCUGcGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 6774 0.68 0.675448
Target:  5'- gGGGcUCGgGGGcuCGGGGGCuCGGggGg -3'
miRNA:   3'- gCCC-AGCgCUCu-GCCCCUGcGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 8777 0.7 0.590448
Target:  5'- uGGGUCuGCGGGGUgagcggaacgacggaGGGGGCGuCGGAGGg -3'
miRNA:   3'- gCCCAG-CGCUCUG---------------CCCCUGC-GUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 8864 0.78 0.205289
Target:  5'- gGGGUCGgucugGGGugGGGGAgGCGGggGg -3'
miRNA:   3'- gCCCAGCg----CUCugCCCCUgCGUCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.