miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31031 5' -58.7 NC_006560.1 + 108302 0.67 0.744746
Target:  5'- -gCUUCUGGAGcggggucagcGCCCgCGCCgcacccagaaagggCCGCGg -3'
miRNA:   3'- uaGAAGACCUCa---------UGGG-GCGGa-------------GGCGC- -5'
31031 5' -58.7 NC_006560.1 + 112048 0.67 0.740908
Target:  5'- uUCUUCUGGGGcaaggACCgCCGCgugCUCCGg- -3'
miRNA:   3'- uAGAAGACCUCa----UGG-GGCG---GAGGCgc -5'
31031 5' -58.7 NC_006560.1 + 119297 0.68 0.651706
Target:  5'- -cUUUCUGGAc-GCCCCGCCgcccaaugCCGCc -3'
miRNA:   3'- uaGAAGACCUcaUGGGGCGGa-------GGCGc -5'
31031 5' -58.7 NC_006560.1 + 125414 0.67 0.750474
Target:  5'- -aCUUCccGGAGUGCCCCcuGCaC-CCGCa -3'
miRNA:   3'- uaGAAGa-CCUCAUGGGG--CG-GaGGCGc -5'
31031 5' -58.7 NC_006560.1 + 125499 0.78 0.207649
Target:  5'- ----cCUGGGGgacgcCCCCGCCUCCGCGc -3'
miRNA:   3'- uagaaGACCUCau---GGGGCGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 128974 0.71 0.483738
Target:  5'- -gCUUCUGGGGccacgacggcGCCCCGUCcCCGCGc -3'
miRNA:   3'- uaGAAGACCUCa---------UGGGGCGGaGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 129138 0.68 0.67185
Target:  5'- uUCUUCgUGGAgaaGUACCuCCGCC-CCGaCGu -3'
miRNA:   3'- uAGAAG-ACCU---CAUGG-GGCGGaGGC-GC- -5'
31031 5' -58.7 NC_006560.1 + 129245 0.73 0.386579
Target:  5'- -gCUgCUGGAGg--CCUGCCUCCGCGu -3'
miRNA:   3'- uaGAaGACCUCaugGGGCGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 131468 0.81 0.125721
Target:  5'- ------aGGAGUGCCCCGCCUUCGCGc -3'
miRNA:   3'- uagaagaCCUCAUGGGGCGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 134220 0.7 0.581125
Target:  5'- ------cGGGGUcgGCCCCGCCcgCCGCGc -3'
miRNA:   3'- uagaagaCCUCA--UGGGGCGGa-GGCGC- -5'
31031 5' -58.7 NC_006560.1 + 145799 0.67 0.71955
Target:  5'- uUCUUCcGGGGcggcgggcacacGCCCgGCCUCgCGCGg -3'
miRNA:   3'- uAGAAGaCCUCa-----------UGGGgCGGAG-GCGC- -5'
31031 5' -58.7 NC_006560.1 + 150468 0.69 0.611299
Target:  5'- ------cGGGGccgGCCCCGCC-CCGCGg -3'
miRNA:   3'- uagaagaCCUCa--UGGGGCGGaGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.