miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31056 5' -60.6 NC_006560.1 + 84822 1 0.004461
Target:  5'- gCCAGCACA-CCCCCUCCAGGACCUGCu -3'
miRNA:   3'- -GGUCGUGUcGGGGGAGGUCCUGGACG- -5'
31056 5' -60.6 NC_006560.1 + 71099 0.82 0.092535
Target:  5'- cCCGGCcCGGaCCCCCcCCGGGACCUGg -3'
miRNA:   3'- -GGUCGuGUC-GGGGGaGGUCCUGGACg -5'
31056 5' -60.6 NC_006560.1 + 43873 0.8 0.119442
Target:  5'- gCCAGCGgGGCCCCgCgacCCAGGGCCUccuGCa -3'
miRNA:   3'- -GGUCGUgUCGGGG-Ga--GGUCCUGGA---CG- -5'
31056 5' -60.6 NC_006560.1 + 81105 0.79 0.132124
Target:  5'- gCCAGCACgAGCUCCCgcauccCCAGcGCCUGCa -3'
miRNA:   3'- -GGUCGUG-UCGGGGGa-----GGUCcUGGACG- -5'
31056 5' -60.6 NC_006560.1 + 59996 0.79 0.146038
Target:  5'- gCCuGUGCAGCCUCCUCCGGGugUUcGCc -3'
miRNA:   3'- -GGuCGUGUCGGGGGAGGUCCugGA-CG- -5'
31056 5' -60.6 NC_006560.1 + 146871 0.78 0.161277
Target:  5'- cCCGGCcCAGCgCCUgggCCAGGGCCUGg -3'
miRNA:   3'- -GGUCGuGUCGgGGGa--GGUCCUGGACg -5'
31056 5' -60.6 NC_006560.1 + 92382 0.78 0.165304
Target:  5'- gCGGCGCGGCCCUggaggCCGGGGCCcGCg -3'
miRNA:   3'- gGUCGUGUCGGGGga---GGUCCUGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 71792 0.78 0.169422
Target:  5'- uUCGGC-CAGCCCUCgCCGGG-CCUGCu -3'
miRNA:   3'- -GGUCGuGUCGGGGGaGGUCCuGGACG- -5'
31056 5' -60.6 NC_006560.1 + 57406 0.77 0.173631
Target:  5'- gCCAGCGCGGCCgCC-CCGGcGACCUcgggGCg -3'
miRNA:   3'- -GGUCGUGUCGGgGGaGGUC-CUGGA----CG- -5'
31056 5' -60.6 NC_006560.1 + 69590 0.77 0.182329
Target:  5'- gCCGGCcCAGCCCgCUCCGGGAgacgguCCUGa -3'
miRNA:   3'- -GGUCGuGUCGGGgGAGGUCCU------GGACg -5'
31056 5' -60.6 NC_006560.1 + 31200 0.77 0.186822
Target:  5'- cCCGGCGCAGCUCCCcCCGGcACCUccGCu -3'
miRNA:   3'- -GGUCGUGUCGGGGGaGGUCcUGGA--CG- -5'
31056 5' -60.6 NC_006560.1 + 147586 0.76 0.202832
Target:  5'- aCGGUGCGGCCCCCgagggugacggaggCCGGGGCC-GCc -3'
miRNA:   3'- gGUCGUGUCGGGGGa-------------GGUCCUGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 57820 0.75 0.231791
Target:  5'- aCguGCGCgaAGCCCCacgCCAGGGCCgcgGCg -3'
miRNA:   3'- -GguCGUG--UCGGGGga-GGUCCUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 81337 0.75 0.254551
Target:  5'- aCAGCGCGGCCCCCaggacgaggCCGGcGGCCaccaGCa -3'
miRNA:   3'- gGUCGUGUCGGGGGa--------GGUC-CUGGa---CG- -5'
31056 5' -60.6 NC_006560.1 + 12313 0.75 0.260521
Target:  5'- cCCAGCAgGcGCCCCaUCgGGGACCggagGCa -3'
miRNA:   3'- -GGUCGUgU-CGGGGgAGgUCCUGGa---CG- -5'
31056 5' -60.6 NC_006560.1 + 51266 0.75 0.260521
Target:  5'- cUCGGCGCA-CCCCgcgCUCCGGGAggcCCUGCu -3'
miRNA:   3'- -GGUCGUGUcGGGG---GAGGUCCU---GGACG- -5'
31056 5' -60.6 NC_006560.1 + 69078 0.74 0.266604
Target:  5'- gCCGGCAgUGGCCgCCCUCCuGGGCUcggGCg -3'
miRNA:   3'- -GGUCGU-GUCGG-GGGAGGuCCUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 5322 0.74 0.279114
Target:  5'- aCGGCgGCGG-CCCCUCCGGGuCCgGCg -3'
miRNA:   3'- gGUCG-UGUCgGGGGAGGUCCuGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 73196 0.74 0.279114
Target:  5'- cCCGGCcuCGGCCCuCCUCgAccugacgcuGGGCCUGCu -3'
miRNA:   3'- -GGUCGu-GUCGGG-GGAGgU---------CCUGGACG- -5'
31056 5' -60.6 NC_006560.1 + 135143 0.74 0.285543
Target:  5'- gCCGGUGcCAGUCCgCCUCCAGGuCCcggUGCg -3'
miRNA:   3'- -GGUCGU-GUCGGG-GGAGGUCCuGG---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.