miRNA display CGI


Results 1 - 20 of 255 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31056 5' -60.6 NC_006560.1 + 96 0.66 0.707382
Target:  5'- cCCcGCGCcccGCCCCCgcggCCGcGGCCgGCg -3'
miRNA:   3'- -GGuCGUGu--CGGGGGa---GGUcCUGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 772 0.66 0.687854
Target:  5'- gCGGCGCGGgUCCUUUCuGGGCCUc- -3'
miRNA:   3'- gGUCGUGUCgGGGGAGGuCCUGGAcg -5'
31056 5' -60.6 NC_006560.1 + 880 0.73 0.312422
Target:  5'- cCCucGCGCGcccGCCCCCcgCCGGGGCCgccgGCc -3'
miRNA:   3'- -GGu-CGUGU---CGGGGGa-GGUCCUGGa---CG- -5'
31056 5' -60.6 NC_006560.1 + 943 0.7 0.4651
Target:  5'- cCCGGCAgccCcGCCCCCgaucuucaCUAGG-CCUGCa -3'
miRNA:   3'- -GGUCGU---GuCGGGGGa-------GGUCCuGGACG- -5'
31056 5' -60.6 NC_006560.1 + 1138 0.69 0.55356
Target:  5'- uCCGGCcCGGCCUCCgggguuccuggcggCCGGGuucUCUGCg -3'
miRNA:   3'- -GGUCGuGUCGGGGGa-------------GGUCCu--GGACG- -5'
31056 5' -60.6 NC_006560.1 + 1243 0.66 0.707382
Target:  5'- cCCA-CGCAGCCCCgg-CGGGGCCcccGCg -3'
miRNA:   3'- -GGUcGUGUCGGGGgagGUCCUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 1314 0.73 0.324414
Target:  5'- gCCcGCACGGCUCCCgagCCcccgggcgcccgacGGGACCgUGCg -3'
miRNA:   3'- -GGuCGUGUCGGGGGa--GG--------------UCCUGG-ACG- -5'
31056 5' -60.6 NC_006560.1 + 1374 0.69 0.511352
Target:  5'- gCCcGCACGGCgCCCCUCCccccgcGGcCCUcGCc -3'
miRNA:   3'- -GGuCGUGUCG-GGGGAGGu-----CCuGGA-CG- -5'
31056 5' -60.6 NC_006560.1 + 1446 0.68 0.569176
Target:  5'- cCCGGCACcGCaCgCCUCCGcGGCCcgUGCg -3'
miRNA:   3'- -GGUCGUGuCG-GgGGAGGUcCUGG--ACG- -5'
31056 5' -60.6 NC_006560.1 + 1580 0.66 0.71706
Target:  5'- cCCucGCGC-GCCCCCUCCuccGAUCgacGCg -3'
miRNA:   3'- -GGu-CGUGuCGGGGGAGGuc-CUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 2981 0.72 0.3718
Target:  5'- aCCAGCACGcGCaCUCCUCgggcucgGGGACCUGg -3'
miRNA:   3'- -GGUCGUGU-CG-GGGGAGg------UCCUGGACg -5'
31056 5' -60.6 NC_006560.1 + 4556 0.69 0.540003
Target:  5'- -gGGCuCGGCCCCgggCCAGGGCUcGCc -3'
miRNA:   3'- ggUCGuGUCGGGGga-GGUCCUGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 5146 0.7 0.483351
Target:  5'- gCGGCGCGGggCCCgggCCGGGGCC-GCg -3'
miRNA:   3'- gGUCGUGUCggGGGa--GGUCCUGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 5322 0.74 0.279114
Target:  5'- aCGGCgGCGG-CCCCUCCGGGuCCgGCg -3'
miRNA:   3'- gGUCG-UGUCgGGGGAGGUCCuGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 5655 0.67 0.628478
Target:  5'- cCCGGC-CGGCUCCgCcCCGGGGCgCggggGCg -3'
miRNA:   3'- -GGUCGuGUCGGGG-GaGGUCCUG-Ga---CG- -5'
31056 5' -60.6 NC_006560.1 + 7503 0.66 0.71706
Target:  5'- -gAGgACGGCCCCCUcCCGGGGgUUc- -3'
miRNA:   3'- ggUCgUGUCGGGGGA-GGUCCUgGAcg -5'
31056 5' -60.6 NC_006560.1 + 7947 0.66 0.726669
Target:  5'- gCGGCGCuGGCgCCCCgcgUCC-GGACCcaccgGCa -3'
miRNA:   3'- gGUCGUG-UCG-GGGG---AGGuCCUGGa----CG- -5'
31056 5' -60.6 NC_006560.1 + 8595 0.67 0.648339
Target:  5'- uCCAGCACacgagGGCCCCCaggCCgcccgagaugAGGGCg-GCg -3'
miRNA:   3'- -GGUCGUG-----UCGGGGGa--GG----------UCCUGgaCG- -5'
31056 5' -60.6 NC_006560.1 + 9550 0.73 0.326566
Target:  5'- gCCGGCgGCGGCCagCC-CCAGGGCC-GCg -3'
miRNA:   3'- -GGUCG-UGUCGGg-GGaGGUCCUGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 9614 0.7 0.483351
Target:  5'- -gGGCGCGGCCCCU---GGGGCC-GCg -3'
miRNA:   3'- ggUCGUGUCGGGGGaggUCCUGGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.