miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31057 3' -64 NC_006560.1 + 84076 1.12 0.000356
Target:  5'- cCCUGGGCCCUGUUCGGGCACCCCCCCg -3'
miRNA:   3'- -GGACCCGGGACAAGCCCGUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 29069 0.78 0.101237
Target:  5'- gCCggcgGGGCCCgcccgUCGGGgACCgCCCCCa -3'
miRNA:   3'- -GGa---CCCGGGaca--AGCCCgUGG-GGGGG- -5'
31057 3' -64 NC_006560.1 + 118053 0.78 0.110659
Target:  5'- --cGGGCCCggcgccgccgCGGGCGCCCCCgCCg -3'
miRNA:   3'- ggaCCCGGGacaa------GCCCGUGGGGG-GG- -5'
31057 3' -64 NC_006560.1 + 112400 0.78 0.114541
Target:  5'- aCCUgccGGGCCCc---CGGGC-CCCCCCCg -3'
miRNA:   3'- -GGA---CCCGGGacaaGCCCGuGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 144254 0.77 0.129463
Target:  5'- gCCcGGGCCCgcccgcGUgcgCGGGgACCCCCCUc -3'
miRNA:   3'- -GGaCCCGGGa-----CAa--GCCCgUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 30819 0.76 0.148653
Target:  5'- cCCUGgcccaGGCCCUGgcccaggcgcugggcCGGGCGCCgCCCCg -3'
miRNA:   3'- -GGAC-----CCGGGACaa-------------GCCCGUGGgGGGG- -5'
31057 3' -64 NC_006560.1 + 69909 0.75 0.168383
Target:  5'- gCCUGGGCCCgggacuuUGgccUCGGGUACCUgCCg -3'
miRNA:   3'- -GGACCCGGG-------ACa--AGCCCGUGGGgGGg -5'
31057 3' -64 NC_006560.1 + 120125 0.75 0.181234
Target:  5'- cCCUGGGCCCcgGggCGugguGGCACUUUCCCa -3'
miRNA:   3'- -GGACCCGGGa-CaaGC----CCGUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 71666 0.74 0.189979
Target:  5'- --cGGGCCUcGgcCGgcGGCGCCCCCCCg -3'
miRNA:   3'- ggaCCCGGGaCaaGC--CCGUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 32837 0.74 0.189979
Target:  5'- --aGGGCCaCgcgGgcggCGGGCAgCCCCCCg -3'
miRNA:   3'- ggaCCCGG-Ga--Caa--GCCCGUgGGGGGG- -5'
31057 3' -64 NC_006560.1 + 134441 0.74 0.189979
Target:  5'- cCCaGGGCCCggcugacgGcgCGGGCGgCCCCCg -3'
miRNA:   3'- -GGaCCCGGGa-------CaaGCCCGUgGGGGGg -5'
31057 3' -64 NC_006560.1 + 20403 0.74 0.199093
Target:  5'- aCCcGGGaCCgCUGgUCGGuCGCCCCCCCc -3'
miRNA:   3'- -GGaCCC-GG-GACaAGCCcGUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 10480 0.74 0.199093
Target:  5'- gCCUcgGGGCCCgGggCGGGgGCCCCgUCg -3'
miRNA:   3'- -GGA--CCCGGGaCaaGCCCgUGGGGgGG- -5'
31057 3' -64 NC_006560.1 + 120173 0.74 0.202371
Target:  5'- gCUGGGCCaUGgaCGaGGCgcugggcgagcuguGCCCCCCCg -3'
miRNA:   3'- gGACCCGGgACaaGC-CCG--------------UGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 11797 0.74 0.213476
Target:  5'- gCCggggggGGGCUCgg-UCGGGCGgCCCUCCg -3'
miRNA:   3'- -GGa-----CCCGGGacaAGCCCGUgGGGGGG- -5'
31057 3' -64 NC_006560.1 + 34995 0.74 0.213476
Target:  5'- gCCUcgGGGCCgCgggccGgcCGGGCGCCCCCuCCg -3'
miRNA:   3'- -GGA--CCCGG-Ga----CaaGCCCGUGGGGG-GG- -5'
31057 3' -64 NC_006560.1 + 34955 0.73 0.218466
Target:  5'- cCCgGGGCCCgGgcgcCGGGCuccgccggGCCCCCCg -3'
miRNA:   3'- -GGaCCCGGGaCaa--GCCCG--------UGGGGGGg -5'
31057 3' -64 NC_006560.1 + 131422 0.73 0.218466
Target:  5'- cCCUGGGCCCgGgccgUCGcGGCGCUggCCCUg -3'
miRNA:   3'- -GGACCCGGGaCa---AGC-CCGUGG--GGGGg -5'
31057 3' -64 NC_006560.1 + 118379 0.73 0.225618
Target:  5'- gCCUGGaGCCCccggggggcgggcgGUUCGGGC-CCgaCCCCg -3'
miRNA:   3'- -GGACC-CGGGa-------------CAAGCCCGuGGg-GGGG- -5'
31057 3' -64 NC_006560.1 + 67988 0.73 0.234034
Target:  5'- --gGGGCCgCggcgccgUCGGGCgacGCCCCCCCc -3'
miRNA:   3'- ggaCCCGG-Gaca----AGCCCG---UGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.