miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31057 3' -64 NC_006560.1 + 71 0.72 0.262041
Target:  5'- --cGGGUCC-GggCGGGC-CCUCCCCg -3'
miRNA:   3'- ggaCCCGGGaCaaGCCCGuGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 687 0.71 0.292716
Target:  5'- --cGGGCUCgucgCGGGCcccguCCCCCCCc -3'
miRNA:   3'- ggaCCCGGGacaaGCCCGu----GGGGGGG- -5'
31057 3' -64 NC_006560.1 + 1367 0.66 0.598095
Target:  5'- cCCcGcGGCCCgcac--GGCGCCCCUCCc -3'
miRNA:   3'- -GGaC-CCGGGacaagcCCGUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 1525 0.66 0.588525
Target:  5'- --cGGGCCC----CGGGCGCgCgCCCg -3'
miRNA:   3'- ggaCCCGGGacaaGCCCGUGgGgGGG- -5'
31057 3' -64 NC_006560.1 + 1941 0.67 0.504283
Target:  5'- uCC-GGGuCCCaGUcCGGGguCGCgCCCCCCa -3'
miRNA:   3'- -GGaCCC-GGGaCAaGCCC--GUG-GGGGGG- -5'
31057 3' -64 NC_006560.1 + 2655 0.67 0.513417
Target:  5'- --cGGGCCCgucggCGGGcCACUCCUCg -3'
miRNA:   3'- ggaCCCGGGacaa-GCCC-GUGGGGGGg -5'
31057 3' -64 NC_006560.1 + 6326 0.71 0.31243
Target:  5'- aCCgGGGaCgCCgcg-CGGGCGCCCCgCCCc -3'
miRNA:   3'- -GGaCCC-G-GGacaaGCCCGUGGGG-GGG- -5'
31057 3' -64 NC_006560.1 + 6837 0.67 0.530952
Target:  5'- aCCggGGGCUCaccUCGGccucugcccgcccGCGCCCCUCCg -3'
miRNA:   3'- -GGa-CCCGGGacaAGCC-------------CGUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 10480 0.74 0.199093
Target:  5'- gCCUcgGGGCCCgGggCGGGgGCCCCgUCg -3'
miRNA:   3'- -GGA--CCCGGGaCaaGCCCgUGGGGgGG- -5'
31057 3' -64 NC_006560.1 + 10667 0.67 0.486232
Target:  5'- --gGGGUCCgcc-CGGGCGCCCCgCg -3'
miRNA:   3'- ggaCCCGGGacaaGCCCGUGGGGgGg -5'
31057 3' -64 NC_006560.1 + 11797 0.74 0.213476
Target:  5'- gCCggggggGGGCUCgg-UCGGGCGgCCCUCCg -3'
miRNA:   3'- -GGa-----CCCGGGacaAGCCCGUgGGGGGG- -5'
31057 3' -64 NC_006560.1 + 13621 0.71 0.305749
Target:  5'- gCCaGGGCCCgGUcCGccgccacguaGGCGCCCCCgCCc -3'
miRNA:   3'- -GGaCCCGGGaCAaGC----------CCGUGGGGG-GG- -5'
31057 3' -64 NC_006560.1 + 14894 0.68 0.451094
Target:  5'- uCCcGGGCCCgggUCGGG-GCCCCUg- -3'
miRNA:   3'- -GGaCCCGGGacaAGCCCgUGGGGGgg -5'
31057 3' -64 NC_006560.1 + 15121 0.69 0.385274
Target:  5'- cCCgggGGGUCUUcGUggucgCGGGCucuggGCCCCCCg -3'
miRNA:   3'- -GGa--CCCGGGA-CAa----GCCCG-----UGGGGGGg -5'
31057 3' -64 NC_006560.1 + 15305 0.68 0.442528
Target:  5'- --gGuGGCC----UCGGGCGCCCCCuCCg -3'
miRNA:   3'- ggaC-CCGGgacaAGCCCGUGGGGG-GG- -5'
31057 3' -64 NC_006560.1 + 15354 0.67 0.495221
Target:  5'- gCCgGGGUCgCgGUgaggcCGGGacuCCCCCCCg -3'
miRNA:   3'- -GGaCCCGG-GaCAa----GCCCgu-GGGGGGG- -5'
31057 3' -64 NC_006560.1 + 18943 0.69 0.412472
Target:  5'- gCCgcgcgGGGCCCggcgGgcgcCGGGCgucgcgggccgcgacGCCgCCCCCg -3'
miRNA:   3'- -GGa----CCCGGGa---Caa--GCCCG---------------UGG-GGGGG- -5'
31057 3' -64 NC_006560.1 + 19523 0.67 0.522618
Target:  5'- gCCUGGaggccacggaGCCCggggcGUUCuccuccGGCGgCCCCCCg -3'
miRNA:   3'- -GGACC----------CGGGa----CAAGc-----CCGUgGGGGGG- -5'
31057 3' -64 NC_006560.1 + 20001 0.66 0.550579
Target:  5'- uCC-GGGCUCcacucGUcCGGGUgguGCCCCUCCg -3'
miRNA:   3'- -GGaCCCGGGa----CAaGCCCG---UGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 20403 0.74 0.199093
Target:  5'- aCCcGGGaCCgCUGgUCGGuCGCCCCCCCc -3'
miRNA:   3'- -GGaCCC-GG-GACaAGCCcGUGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.