miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31057 5' -56.2 NC_006560.1 + 84111 1.13 0.0014
Target:  5'- cGGGGAGGAGCUGCUCCUGUACAAGGCc -3'
miRNA:   3'- -CCCCUCCUCGACGAGGACAUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 128661 0.77 0.330188
Target:  5'- --cGGGGAGCUGCUCgUGUauauggACGGGGCg -3'
miRNA:   3'- cccCUCCUCGACGAGgACA------UGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 98297 0.75 0.428722
Target:  5'- cGGGGcccuggccguGGGGCUGCuggUCCUG-GCGGGGCu -3'
miRNA:   3'- -CCCCu---------CCUCGACG---AGGACaUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 48455 0.74 0.446761
Target:  5'- cGGGAGGGGCUGC-CCgcGUACugcgcGGCc -3'
miRNA:   3'- cCCCUCCUCGACGaGGa-CAUGuu---CCG- -5'
31057 5' -56.2 NC_006560.1 + 146507 0.74 0.446761
Target:  5'- cGGGGGGAGCUGCgCCgg-GC-GGGCc -3'
miRNA:   3'- cCCCUCCUCGACGaGGacaUGuUCCG- -5'
31057 5' -56.2 NC_006560.1 + 104787 0.74 0.455938
Target:  5'- cGGGGGGGAGCggucggaaGCcCCgugACGGGGCg -3'
miRNA:   3'- -CCCCUCCUCGa-------CGaGGacaUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 80808 0.74 0.47459
Target:  5'- gGGGGAGgGGGCUGCg---GgGCGGGGCg -3'
miRNA:   3'- -CCCCUC-CUCGACGaggaCaUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 15935 0.74 0.493615
Target:  5'- uGGGGGGGAGCcGC-CCUgGUACGuguGGGa -3'
miRNA:   3'- -CCCCUCCUCGaCGaGGA-CAUGU---UCCg -5'
31057 5' -56.2 NC_006560.1 + 131684 0.74 0.493615
Target:  5'- cGGGcGGGGGGCUGCUCCgcccgGAGGa -3'
miRNA:   3'- -CCC-CUCCUCGACGAGGacaugUUCCg -5'
31057 5' -56.2 NC_006560.1 + 85537 0.73 0.512983
Target:  5'- uGGGGGGGGCggggGCgCCcGUGgGGGGCg -3'
miRNA:   3'- cCCCUCCUCGa---CGaGGaCAUgUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 59974 0.72 0.562644
Target:  5'- aGGGAGGccaugacGCUGCgcugCCUGUGCAgccuccuccGGGUg -3'
miRNA:   3'- cCCCUCCu------CGACGa---GGACAUGU---------UCCG- -5'
31057 5' -56.2 NC_006560.1 + 93917 0.72 0.562644
Target:  5'- cGGuGAcccuGGAGCUGCUCCUcgaGUACGcgcagcgcgaGGGCg -3'
miRNA:   3'- cCC-CU----CCUCGACGAGGA---CAUGU----------UCCG- -5'
31057 5' -56.2 NC_006560.1 + 149363 0.72 0.566679
Target:  5'- cGGGGAGGAGCcggGCggcgCCgccccccgagcgggGUAUAAGGg -3'
miRNA:   3'- -CCCCUCCUCGa--CGa---GGa-------------CAUGUUCCg -5'
31057 5' -56.2 NC_006560.1 + 35697 0.72 0.581873
Target:  5'- cGGGGGGGAGCgagaaagcgagagUGCUC-UGUuCcGGGCg -3'
miRNA:   3'- -CCCCUCCUCG-------------ACGAGgACAuGuUCCG- -5'
31057 5' -56.2 NC_006560.1 + 62380 0.72 0.582889
Target:  5'- cGGGGGGuGGCgGCUCCgGUGCucGAGGg -3'
miRNA:   3'- -CCCCUCcUCGaCGAGGaCAUG--UUCCg -5'
31057 5' -56.2 NC_006560.1 + 56392 0.72 0.603276
Target:  5'- cGGGGAGGguacGGUUGC-CCcGcGCGGGGCc -3'
miRNA:   3'- -CCCCUCC----UCGACGaGGaCaUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 68119 0.71 0.633998
Target:  5'- gGGGGAGGAcGCcgUGUUgCUGUcgGCcAGGCu -3'
miRNA:   3'- -CCCCUCCU-CG--ACGAgGACA--UGuUCCG- -5'
31057 5' -56.2 NC_006560.1 + 75797 0.71 0.654485
Target:  5'- uGGcGGAGGGGCUGCUggcCCUcucGCAggccggGGGCg -3'
miRNA:   3'- -CC-CCUCCUCGACGA---GGAca-UGU------UCCG- -5'
31057 5' -56.2 NC_006560.1 + 32433 0.7 0.68506
Target:  5'- gGGGGccgGGGGGCcgggGCUCCcccACGGGGCc -3'
miRNA:   3'- -CCCC---UCCUCGa---CGAGGacaUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 84657 0.7 0.709246
Target:  5'- uGGGGuacuaccucggcaucGGGGGCUGCUgccccgCCUGcgGCGcGGGCg -3'
miRNA:   3'- -CCCC---------------UCCUCGACGA------GGACa-UGU-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.