miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31057 5' -56.2 NC_006560.1 + 1975 0.67 0.842802
Target:  5'- cGGGGGcGGGGCUcggggccgggccaGCUCCaGgGCGGcGGCg -3'
miRNA:   3'- -CCCCU-CCUCGA-------------CGAGGaCaUGUU-CCG- -5'
31057 5' -56.2 NC_006560.1 + 3447 0.69 0.763989
Target:  5'- cGGGGGcGAGgaGCUCUUGcGCuugcGGGCc -3'
miRNA:   3'- cCCCUC-CUCgaCGAGGACaUGu---UCCG- -5'
31057 5' -56.2 NC_006560.1 + 4252 0.66 0.881492
Target:  5'- cGGuGAugaaGGAGCUGCUgUUGcGCcGGGCg -3'
miRNA:   3'- cCC-CU----CCUCGACGAgGACaUGuUCCG- -5'
31057 5' -56.2 NC_006560.1 + 4548 0.69 0.754437
Target:  5'- gGGGGcGGGGGCUcgGCcCCgGgcCAGGGCu -3'
miRNA:   3'- -CCCC-UCCUCGA--CGaGGaCauGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 9077 0.68 0.800933
Target:  5'- gGGGGAGGGGCgGCg---GgGCGAcGGCg -3'
miRNA:   3'- -CCCCUCCUCGaCGaggaCaUGUU-CCG- -5'
31057 5' -56.2 NC_006560.1 + 9881 0.66 0.888423
Target:  5'- cGGGGGGGcGGCacGCUgCgcgaGCAGGGCc -3'
miRNA:   3'- -CCCCUCC-UCGa-CGAgGaca-UGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 11117 0.67 0.827065
Target:  5'- cGGGGGGGGGggGCUCagcggGCGucgaGGGCc -3'
miRNA:   3'- -CCCCUCCUCgaCGAGgaca-UGU----UCCG- -5'
31057 5' -56.2 NC_006560.1 + 11349 0.66 0.874339
Target:  5'- aGGGGGGGcGGUagaUGCgggCCggGUGCGGccGGCg -3'
miRNA:   3'- -CCCCUCC-UCG---ACGa--GGa-CAUGUU--CCG- -5'
31057 5' -56.2 NC_006560.1 + 11617 0.66 0.9016
Target:  5'- cGGcGGGGGAGUcGCUUCcGgggGCucGGCg -3'
miRNA:   3'- -CC-CCUCCUCGaCGAGGaCa--UGuuCCG- -5'
31057 5' -56.2 NC_006560.1 + 14778 0.68 0.809808
Target:  5'- aGGGGuGGGGGCgggcacggGCUCCgucGgGGGGCu -3'
miRNA:   3'- -CCCC-UCCUCGa-------CGAGGacaUgUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 14847 0.67 0.835431
Target:  5'- cGGGGGGAGCgugGCggCCgg-GCGccggggGGGCg -3'
miRNA:   3'- cCCCUCCUCGa--CGa-GGacaUGU------UCCG- -5'
31057 5' -56.2 NC_006560.1 + 15705 0.66 0.881492
Target:  5'- aGGGGcgccgcAGGGGCgGCgggCCgGcACGGGGCc -3'
miRNA:   3'- -CCCC------UCCUCGaCGa--GGaCaUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 15935 0.74 0.493615
Target:  5'- uGGGGGGGAGCcGC-CCUgGUACGuguGGGa -3'
miRNA:   3'- -CCCCUCCUCGaCGaGGA-CAUGU---UCCg -5'
31057 5' -56.2 NC_006560.1 + 20065 0.69 0.754437
Target:  5'- cGGGGcguuccgacGGGGGCgGCUCC-GUGCcGGGa -3'
miRNA:   3'- -CCCC---------UCCUCGaCGAGGaCAUGuUCCg -5'
31057 5' -56.2 NC_006560.1 + 26001 0.69 0.754437
Target:  5'- gGGGGAGGGGCg---CC-GUGC-GGGCc -3'
miRNA:   3'- -CCCCUCCUCGacgaGGaCAUGuUCCG- -5'
31057 5' -56.2 NC_006560.1 + 27220 0.66 0.895127
Target:  5'- cGGGGcGGGGCcgGgaCCgcgGgGCGGGGCc -3'
miRNA:   3'- -CCCCuCCUCGa-CgaGGa--CaUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 28366 0.67 0.866969
Target:  5'- cGGGGAGGAGCcGCcgCC-GUcUccGGCc -3'
miRNA:   3'- -CCCCUCCUCGaCGa-GGaCAuGuuCCG- -5'
31057 5' -56.2 NC_006560.1 + 29606 0.67 0.866969
Target:  5'- cGGcGGGGGAcGCc-CUCCUGgACGAGGa -3'
miRNA:   3'- -CC-CCUCCU-CGacGAGGACaUGUUCCg -5'
31057 5' -56.2 NC_006560.1 + 32433 0.7 0.68506
Target:  5'- gGGGGccgGGGGGCcgggGCUCCcccACGGGGCc -3'
miRNA:   3'- -CCCC---UCCUCGa---CGAGGacaUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 32603 0.68 0.782732
Target:  5'- gGGGGcGGGGGCUGCcCCaGggGCucggGAGGCc -3'
miRNA:   3'- -CCCC-UCCUCGACGaGGaCa-UG----UUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.