miRNA display CGI


Results 1 - 20 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31058 3' -66.3 NC_006560.1 + 83787 1.06 0.000563
Target:  5'- gCAGCCGCGGCCGCACGGGCGGCGAGUg -3'
miRNA:   3'- -GUCGGCGCCGGCGUGCCCGCCGCUCA- -5'
31058 3' -66.3 NC_006560.1 + 113 0.86 0.018408
Target:  5'- gCGGCCGCGGCCgGCGCGGGUuugGGCGGGg -3'
miRNA:   3'- -GUCGGCGCCGG-CGUGCCCG---CCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 150442 0.86 0.018408
Target:  5'- gCGGCCGCGGCCgGCGCGGGUuugGGCGGGg -3'
miRNA:   3'- -GUCGGCGCCGG-CGUGCCCG---CCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 27270 0.85 0.020411
Target:  5'- cCGGCCGCGGCCGCGgGGGCGgggcGCGGGg -3'
miRNA:   3'- -GUCGGCGCCGGCGUgCCCGC----CGCUCa -5'
31058 3' -66.3 NC_006560.1 + 75131 0.85 0.022572
Target:  5'- gGGCCGCGGCCGCcgaccuggcggcgGCGGuGCGGCGGGa -3'
miRNA:   3'- gUCGGCGCCGGCG-------------UGCC-CGCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 35262 0.84 0.025743
Target:  5'- gGGCCGCGcggccGCCGCGcCGGGCGGCGGGg -3'
miRNA:   3'- gUCGGCGC-----CGGCGU-GCCCGCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 144368 0.83 0.031621
Target:  5'- gGGCCGCGGCgGCAgGGGCGGCGu-- -3'
miRNA:   3'- gUCGGCGCCGgCGUgCCCGCCGCuca -5'
31058 3' -66.3 NC_006560.1 + 4649 0.8 0.053918
Target:  5'- gGGCCGCGGCCGCGCGGccgugaaGCGGCccGUg -3'
miRNA:   3'- gUCGGCGCCGGCGUGCC-------CGCCGcuCA- -5'
31058 3' -66.3 NC_006560.1 + 118016 0.79 0.059819
Target:  5'- aGGCCGCGG-CGCACcuGGCGGCGGGg -3'
miRNA:   3'- gUCGGCGCCgGCGUGc-CCGCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 57842 0.79 0.06135
Target:  5'- gGGCCGCGGCgcaCGCgaGCGGGCGGCaGGGg -3'
miRNA:   3'- gUCGGCGCCG---GCG--UGCCCGCCG-CUCa -5'
31058 3' -66.3 NC_006560.1 + 37526 0.78 0.066176
Target:  5'- -cGCCGCggcucGGCCGCGCGGGCGGCc--- -3'
miRNA:   3'- guCGGCG-----CCGGCGUGCCCGCCGcuca -5'
31058 3' -66.3 NC_006560.1 + 148456 0.78 0.073181
Target:  5'- gGGCCGaCGGUCGuCugGGGCGGCGGa- -3'
miRNA:   3'- gUCGGC-GCCGGC-GugCCCGCCGCUca -5'
31058 3' -66.3 NC_006560.1 + 87865 0.78 0.075041
Target:  5'- aGGCCGCGGUgggGCGCGGGUGGgGGGg -3'
miRNA:   3'- gUCGGCGCCGg--CGUGCCCGCCgCUCa -5'
31058 3' -66.3 NC_006560.1 + 102259 0.77 0.082942
Target:  5'- gAGCCGcCGGCCGCGCGGcCGGCGu-- -3'
miRNA:   3'- gUCGGC-GCCGGCGUGCCcGCCGCuca -5'
31058 3' -66.3 NC_006560.1 + 109175 0.77 0.082942
Target:  5'- gGGCCgGCGGUCGCGUGGGCGGCagacgGAGUa -3'
miRNA:   3'- gUCGG-CGCCGGCGUGCCCGCCG-----CUCA- -5'
31058 3' -66.3 NC_006560.1 + 133148 0.77 0.086536
Target:  5'- uGGCCGCGGCagCGCGCGaaguaguccucggaGGCGGUGAGg -3'
miRNA:   3'- gUCGGCGCCG--GCGUGC--------------CCGCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 33802 0.77 0.089383
Target:  5'- aAGUCGCGGgCGCggACGGGgGGCGGGg -3'
miRNA:   3'- gUCGGCGCCgGCG--UGCCCgCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 147044 0.77 0.089383
Target:  5'- aCGGCCGgggGGCgGCggggggagGCGGGCGGCGAGUc -3'
miRNA:   3'- -GUCGGCg--CCGgCG--------UGCCCGCCGCUCA- -5'
31058 3' -66.3 NC_006560.1 + 3466 0.76 0.093938
Target:  5'- -cGCuUGCgGGCCGCGCGGGCGGCGu-- -3'
miRNA:   3'- guCG-GCG-CCGGCGUGCCCGCCGCuca -5'
31058 3' -66.3 NC_006560.1 + 99884 0.76 0.093938
Target:  5'- gGGUCGUGGCgGCgGCGGGCGGCGcGGg -3'
miRNA:   3'- gUCGGCGCCGgCG-UGCCCGCCGC-UCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.