miRNA display CGI


Results 1 - 20 of 393 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31058 3' -66.3 NC_006560.1 + 113 0.86 0.018408
Target:  5'- gCGGCCGCGGCCgGCGCGGGUuugGGCGGGg -3'
miRNA:   3'- -GUCGGCGCCGG-CGUGCCCG---CCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 444 0.69 0.279285
Target:  5'- gCGGCCuccGCGGCCuCcccgGCGGGCGGCcAGUc -3'
miRNA:   3'- -GUCGG---CGCCGGcG----UGCCCGCCGcUCA- -5'
31058 3' -66.3 NC_006560.1 + 904 0.71 0.233426
Target:  5'- gGGCCGcCGGCCGCucccGGCGGUgGAGg -3'
miRNA:   3'- gUCGGC-GCCGGCGugc-CCGCCG-CUCa -5'
31058 3' -66.3 NC_006560.1 + 1490 0.67 0.376174
Target:  5'- aGGCgCGCGGCC-CACGccGGCGG-GAGc -3'
miRNA:   3'- gUCG-GCGCCGGcGUGC--CCGCCgCUCa -5'
31058 3' -66.3 NC_006560.1 + 1875 0.73 0.160641
Target:  5'- gGGUCGCGGgCGgggguCGCGGGCGGCGGc- -3'
miRNA:   3'- gUCGGCGCCgGC-----GUGCCCGCCGCUca -5'
31058 3' -66.3 NC_006560.1 + 1949 0.69 0.311432
Target:  5'- cCAGuCCGgGGUCGCGCcccccaGGGCgggGGCGGGg -3'
miRNA:   3'- -GUC-GGCgCCGGCGUG------CCCG---CCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 1990 0.7 0.261296
Target:  5'- gGGCCG-GGCCaGCuccaGGGCGGCGGcGUc -3'
miRNA:   3'- gUCGGCgCCGG-CGug--CCCGCCGCU-CA- -5'
31058 3' -66.3 NC_006560.1 + 2047 0.75 0.111669
Target:  5'- gCGGCCgGCGGCCcagcGCACGcgcggcgcGGCGGCGGGg -3'
miRNA:   3'- -GUCGG-CGCCGG----CGUGC--------CCGCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 2199 0.66 0.466725
Target:  5'- -cGCgCGCGGCCGCGCGGucCaGCGccaGGUa -3'
miRNA:   3'- guCG-GCGCCGGCGUGCCc-GcCGC---UCA- -5'
31058 3' -66.3 NC_006560.1 + 2312 0.74 0.126203
Target:  5'- cCGGCgGCGGCCGCcucGCGcGCGgGCGAGUc -3'
miRNA:   3'- -GUCGgCGCCGGCG---UGCcCGC-CGCUCA- -5'
31058 3' -66.3 NC_006560.1 + 2342 0.71 0.221467
Target:  5'- uCGGCggCGCGGCCgucgagcgcgggcaGCACGGcGCGGCG-GUa -3'
miRNA:   3'- -GUCG--GCGCCGG--------------CGUGCC-CGCCGCuCA- -5'
31058 3' -66.3 NC_006560.1 + 2454 0.75 0.111669
Target:  5'- -cGCCGCGGCCcagGCGCGgcGGCGGCGcGUc -3'
miRNA:   3'- guCGGCGCCGG---CGUGC--CCGCCGCuCA- -5'
31058 3' -66.3 NC_006560.1 + 2542 0.72 0.180871
Target:  5'- gCGGCCGgaGGCgaGCACGGcGCGGCGcAGg -3'
miRNA:   3'- -GUCGGCg-CCGg-CGUGCC-CGCCGC-UCa -5'
31058 3' -66.3 NC_006560.1 + 2584 0.67 0.368548
Target:  5'- gGGCCaGCGGacguCGCACuGcGCGGCGGGc -3'
miRNA:   3'- gUCGG-CGCCg---GCGUGcC-CGCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 2837 0.69 0.27561
Target:  5'- cCGGCCcagGCGGCCGUgucgggcccgcagagGCGGuuggccagcGCGGCGAGc -3'
miRNA:   3'- -GUCGG---CGCCGGCG---------------UGCC---------CGCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 2907 0.7 0.267186
Target:  5'- -cGCgCGCGGCgGUccagGCGGGCggGGCGGGg -3'
miRNA:   3'- guCG-GCGCCGgCG----UGCCCG--CCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 3099 0.66 0.44088
Target:  5'- gCAGCgCGCGGCCaGCGaGGccagcGCGcGCGGGUc -3'
miRNA:   3'- -GUCG-GCGCCGG-CGUgCC-----CGC-CGCUCA- -5'
31058 3' -66.3 NC_006560.1 + 3212 0.74 0.126203
Target:  5'- aGGCCucgaggGCGGCgGCgGCGGGCGGCGGcGUg -3'
miRNA:   3'- gUCGG------CGCCGgCG-UGCCCGCCGCU-CA- -5'
31058 3' -66.3 NC_006560.1 + 3273 0.74 0.138737
Target:  5'- cCAGCCGCcgcgggggucgGGcCCGCcgggcggGCGGGCGGUGAGc -3'
miRNA:   3'- -GUCGGCG-----------CC-GGCG-------UGCCCGCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 3324 0.74 0.132494
Target:  5'- gGGCCGgGGgCGCggGCGGGCGGCGu-- -3'
miRNA:   3'- gUCGGCgCCgGCG--UGCCCGCCGCuca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.