Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31058 | 5' | -58.6 | NC_006560.1 | + | 83823 | 0.96 | 0.011544 |
Target: 5'- gCAACCUGCU-CUGGUGCGGGCCUACUg -3' miRNA: 3'- -GUUGGACGAcGACCACGCCCGGAUGA- -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 134196 | 0.82 | 0.107311 |
Target: 5'- gGAgCUGCUGCUGGcGCGGGCCcGCg -3' miRNA: 3'- gUUgGACGACGACCaCGCCCGGaUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 230 | 0.74 | 0.320103 |
Target: 5'- cCGGCCcGCgGCUcGGUGCGGGCCccaACUg -3' miRNA: 3'- -GUUGGaCGaCGA-CCACGCCCGGa--UGA- -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 3576 | 0.73 | 0.382408 |
Target: 5'- -cACCUGCcGCgGGcUGCGGGCCaGCa -3' miRNA: 3'- guUGGACGaCGaCC-ACGCCCGGaUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 68668 | 0.72 | 0.416447 |
Target: 5'- gGGCCUGCgguucCUGGcGCGGGCCaGCa -3' miRNA: 3'- gUUGGACGac---GACCaCGCCCGGaUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 71745 | 0.71 | 0.489721 |
Target: 5'- gCGGCCUGC-GCUGcGUGUucuccaGGGUCUACg -3' miRNA: 3'- -GUUGGACGaCGAC-CACG------CCCGGAUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 146931 | 0.7 | 0.49931 |
Target: 5'- gGGCCUGC-GuCUGG-GCcuGGGCCUGCg -3' miRNA: 3'- gUUGGACGaC-GACCaCG--CCCGGAUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 130613 | 0.7 | 0.508981 |
Target: 5'- cCGGCC-GCgcgGCUGGcGUGGGCCcgGCUg -3' miRNA: 3'- -GUUGGaCGa--CGACCaCGCCCGGa-UGA- -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 98305 | 0.7 | 0.508981 |
Target: 5'- uGGCCgugggGCUGCUGGUccugGCGGGgCUGg- -3' miRNA: 3'- gUUGGa----CGACGACCA----CGCCCgGAUga -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 135205 | 0.69 | 0.568463 |
Target: 5'- gCGGCCUGCaGCUGGcggGuCGcGGCCUcGCUg -3' miRNA: 3'- -GUUGGACGaCGACCa--C-GC-CCGGA-UGA- -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 84143 | 0.69 | 0.568463 |
Target: 5'- uGGCCUGCgGCaacgaguucgGGggGCGGGUCUGCa -3' miRNA: 3'- gUUGGACGaCGa---------CCa-CGCCCGGAUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 105725 | 0.69 | 0.609086 |
Target: 5'- -cACCUgGCUGaUGGcgGCGGGCCUcCUg -3' miRNA: 3'- guUGGA-CGACgACCa-CGCCCGGAuGA- -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 51567 | 0.68 | 0.628505 |
Target: 5'- -cGCCUGCUgggguuugccgacGC-GGUGCuGGCCUGCc -3' miRNA: 3'- guUGGACGA-------------CGaCCACGcCCGGAUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 126222 | 0.68 | 0.670372 |
Target: 5'- uCGACCcuccgggggUGgUGUUGGaUGCGGGCgUACg -3' miRNA: 3'- -GUUGG---------ACgACGACC-ACGCCCGgAUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 68034 | 0.68 | 0.670372 |
Target: 5'- aCGGCCcGCUGCaGGcucugcUGCGGGCCcugACc -3' miRNA: 3'- -GUUGGaCGACGaCC------ACGCCCGGa--UGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 81387 | 0.67 | 0.680526 |
Target: 5'- aCGGCCcGCUGCUGc--CGGGCCaGCg -3' miRNA: 3'- -GUUGGaCGACGACcacGCCCGGaUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 71974 | 0.67 | 0.710715 |
Target: 5'- cCGGCCUucGUcGCgaaGGUGCGGGCCg--- -3' miRNA: 3'- -GUUGGA--CGaCGa--CCACGCCCGGauga -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 5160 | 0.67 | 0.710715 |
Target: 5'- gGGCCgggGCcGCgGGgGCGGGCCgcgGCg -3' miRNA: 3'- gUUGGa--CGaCGaCCaCGCCCGGa--UGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 78387 | 0.67 | 0.710715 |
Target: 5'- gGACCUGgUGCUGGcggccacgcuccUGgGGGCCc--- -3' miRNA: 3'- gUUGGACgACGACC------------ACgCCCGGauga -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 59378 | 0.67 | 0.720657 |
Target: 5'- uCAGCCaugGCUGgUGGUGCGGGa----- -3' miRNA: 3'- -GUUGGa--CGACgACCACGCCCggauga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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