Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31058 | 5' | -58.6 | NC_006560.1 | + | 230 | 0.74 | 0.320103 |
Target: 5'- cCGGCCcGCgGCUcGGUGCGGGCCccaACUg -3' miRNA: 3'- -GUUGGaCGaCGA-CCACGCCCGGa--UGA- -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 3576 | 0.73 | 0.382408 |
Target: 5'- -cACCUGCcGCgGGcUGCGGGCCaGCa -3' miRNA: 3'- guUGGACGaCGaCC-ACGCCCGGaUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 5160 | 0.67 | 0.710715 |
Target: 5'- gGGCCgggGCcGCgGGgGCGGGCCgcgGCg -3' miRNA: 3'- gUUGGa--CGaCGaCCaCGCCCGGa--UGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 24503 | 0.66 | 0.74999 |
Target: 5'- --uCCUGCUcgccgcGCUGGccaaccgccucUGCGGGCCcgACa -3' miRNA: 3'- guuGGACGA------CGACC-----------ACGCCCGGa-UGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 51567 | 0.68 | 0.628505 |
Target: 5'- -cGCCUGCUgggguuugccgacGC-GGUGCuGGCCUGCc -3' miRNA: 3'- guUGGACGA-------------CGaCCACGcCCGGAUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 51974 | 0.66 | 0.759574 |
Target: 5'- --uCCggGCgGCgGGcgGCGGGCCUGCc -3' miRNA: 3'- guuGGa-CGaCGaCCa-CGCCCGGAUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 59378 | 0.67 | 0.720657 |
Target: 5'- uCAGCCaugGCUGgUGGUGCGGGa----- -3' miRNA: 3'- -GUUGGa--CGACgACCACGCCCggauga -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 68034 | 0.68 | 0.670372 |
Target: 5'- aCGGCCcGCUGCaGGcucugcUGCGGGCCcugACc -3' miRNA: 3'- -GUUGGaCGACGaCC------ACGCCCGGa--UGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 68418 | 0.67 | 0.720657 |
Target: 5'- --gUCUGCUGgaGGcgGCGGGaCUGCg -3' miRNA: 3'- guuGGACGACgaCCa-CGCCCgGAUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 68668 | 0.72 | 0.416447 |
Target: 5'- gGGCCUGCgguucCUGGcGCGGGCCaGCa -3' miRNA: 3'- gUUGGACGac---GACCaCGCCCGGaUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 71745 | 0.71 | 0.489721 |
Target: 5'- gCGGCCUGC-GCUGcGUGUucuccaGGGUCUACg -3' miRNA: 3'- -GUUGGACGaCGAC-CACG------CCCGGAUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 71974 | 0.67 | 0.710715 |
Target: 5'- cCGGCCUucGUcGCgaaGGUGCGGGCCg--- -3' miRNA: 3'- -GUUGGA--CGaCGa--CCACGCCCGGauga -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 75784 | 0.67 | 0.730523 |
Target: 5'- -cGCCUGCUGCgccUGGcgGaGGGgCUGCUg -3' miRNA: 3'- guUGGACGACG---ACCa-CgCCCgGAUGA- -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 77209 | 0.66 | 0.769044 |
Target: 5'- gGACCUGCggaUGGUGCGcuGCCgggGCg -3' miRNA: 3'- gUUGGACGacgACCACGCc-CGGa--UGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 78387 | 0.67 | 0.710715 |
Target: 5'- gGACCUGgUGCUGGcggccacgcuccUGgGGGCCc--- -3' miRNA: 3'- gUUGGACgACGACC------------ACgCCCGGauga -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 81387 | 0.67 | 0.680526 |
Target: 5'- aCGGCCcGCUGCUGc--CGGGCCaGCg -3' miRNA: 3'- -GUUGGaCGACGACcacGCCCGGaUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 83823 | 0.96 | 0.011544 |
Target: 5'- gCAACCUGCU-CUGGUGCGGGCCUACUg -3' miRNA: 3'- -GUUGGACGAcGACCACGCCCGGAUGA- -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 84143 | 0.69 | 0.568463 |
Target: 5'- uGGCCUGCgGCaacgaguucgGGggGCGGGUCUGCa -3' miRNA: 3'- gUUGGACGaCGa---------CCa-CGCCCGGAUGa -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 86468 | 0.66 | 0.768102 |
Target: 5'- gCGGCCUGCUGCUugucgaggagcacGGccuccuCGGGCgUGCUc -3' miRNA: 3'- -GUUGGACGACGA-------------CCac----GCCCGgAUGA- -5' |
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31058 | 5' | -58.6 | NC_006560.1 | + | 86685 | 0.66 | 0.78761 |
Target: 5'- aCAGCgUGCUGaagcagaGGuUGUGGGCCUGg- -3' miRNA: 3'- -GUUGgACGACga-----CC-ACGCCCGGAUga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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