miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31065 3' -55.5 NC_006560.1 + 71261 1.08 0.003349
Target:  5'- cGCCGCGCGCGGCCUCCGAACAAUAAAc -3'
miRNA:   3'- -CGGCGCGCGCCGGAGGCUUGUUAUUU- -5'
31065 3' -55.5 NC_006560.1 + 126424 0.8 0.231323
Target:  5'- aGCCGCGCGCGcGCCggaucgCCGAGCGc---- -3'
miRNA:   3'- -CGGCGCGCGC-CGGa-----GGCUUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 12413 0.79 0.280727
Target:  5'- cCCGCGCGCGGCCgaCGAACGggGAAc -3'
miRNA:   3'- cGGCGCGCGCCGGagGCUUGUuaUUU- -5'
31065 3' -55.5 NC_006560.1 + 121371 0.78 0.287461
Target:  5'- aGCUGC-CGgaaGGCCUCCGAGCGGUGGAg -3'
miRNA:   3'- -CGGCGcGCg--CCGGAGGCUUGUUAUUU- -5'
31065 3' -55.5 NC_006560.1 + 22680 0.78 0.315663
Target:  5'- cGCCGCGCGCGcGCCgccguggCCGGGCGc---- -3'
miRNA:   3'- -CGGCGCGCGC-CGGa------GGCUUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 51605 0.77 0.353781
Target:  5'- cGCCGC-CGCGGCCUUCGAcgGCGGg--- -3'
miRNA:   3'- -CGGCGcGCGCCGGAGGCU--UGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 114912 0.76 0.403654
Target:  5'- gGCgCGCGCGCGGCC-CCaGAGCGGc--- -3'
miRNA:   3'- -CG-GCGCGCGCCGGaGG-CUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 3788 0.76 0.412388
Target:  5'- cGgCGCGCGCGGCCgccagcCCGGGCAc---- -3'
miRNA:   3'- -CgGCGCGCGCCGGa-----GGCUUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 77198 0.76 0.412388
Target:  5'- cGCCGCGCGcCGGaCCUgCGGAUggUGc- -3'
miRNA:   3'- -CGGCGCGC-GCC-GGAgGCUUGuuAUuu -5'
31065 3' -55.5 NC_006560.1 + 94513 0.75 0.44846
Target:  5'- aGCCGCgaGCGCGGCCcCgCGGACGAg--- -3'
miRNA:   3'- -CGGCG--CGCGCCGGaG-GCUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 29339 0.74 0.476628
Target:  5'- aGCCcuCGCGCGGCCUCgGAGCc----- -3'
miRNA:   3'- -CGGc-GCGCGCCGGAGgCUUGuuauuu -5'
31065 3' -55.5 NC_006560.1 + 27415 0.74 0.476628
Target:  5'- gGCgCGCGCGCgGGCCUCCG-GCGu---- -3'
miRNA:   3'- -CG-GCGCGCG-CCGGAGGCuUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 81576 0.74 0.486211
Target:  5'- cGCCGCGUGCGGCCggcguccUCGGGCcccAUGAAc -3'
miRNA:   3'- -CGGCGCGCGCCGGa------GGCUUGu--UAUUU- -5'
31065 3' -55.5 NC_006560.1 + 18942 0.74 0.486211
Target:  5'- uGCCGCGCGgGGCCcggcgggcgCCGGGCGu---- -3'
miRNA:   3'- -CGGCGCGCgCCGGa--------GGCUUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 2904 0.74 0.515487
Target:  5'- cGCCGCGCGCGGCggUCCaGGCGGg--- -3'
miRNA:   3'- -CGGCGCGCGCCGg-AGGcUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 124482 0.74 0.515487
Target:  5'- cGCgGCGCGCGGCCgccgCCGAc------- -3'
miRNA:   3'- -CGgCGCGCGCCGGa---GGCUuguuauuu -5'
31065 3' -55.5 NC_006560.1 + 121155 0.73 0.525405
Target:  5'- uGCuCG-GCGUGGUCUCCGAGCAGc--- -3'
miRNA:   3'- -CG-GCgCGCGCCGGAGGCUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 142180 0.73 0.529393
Target:  5'- -gCGCgggcccuaaugggagGCGCGGCCUCCGGGCGGc--- -3'
miRNA:   3'- cgGCG---------------CGCGCCGGAGGCUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 143189 0.73 0.54545
Target:  5'- cCCGCGCGCcccgugccGGCCUCCGGagccGCGAc--- -3'
miRNA:   3'- cGGCGCGCG--------CCGGAGGCU----UGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 35249 0.73 0.555565
Target:  5'- cGCCGCaccugcggggccGCGCGGCCgccgcgCCGGGCGGc--- -3'
miRNA:   3'- -CGGCG------------CGCGCCGGa-----GGCUUGUUauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.