miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31065 3' -55.5 NC_006560.1 + 203 0.66 0.911996
Target:  5'- uCCGCGCGCGcGCCgCCGcGgGAg--- -3'
miRNA:   3'- cGGCGCGCGC-CGGaGGCuUgUUauuu -5'
31065 3' -55.5 NC_006560.1 + 441 0.67 0.886006
Target:  5'- uCCGCGgccucCGCGGCCUCCccggcGGGCGGc--- -3'
miRNA:   3'- cGGCGC-----GCGCCGGAGG-----CUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 1479 0.66 0.905856
Target:  5'- cGCCccaucggagGCGCGCGGCCcacgCCG-GCGGg--- -3'
miRNA:   3'- -CGG---------CGCGCGCCGGa---GGCuUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 2196 0.67 0.871619
Target:  5'- cGgCGCGCGCGGCCgcgcggUCC-AGCGccagGUAGAc -3'
miRNA:   3'- -CgGCGCGCGCCGG------AGGcUUGU----UAUUU- -5'
31065 3' -55.5 NC_006560.1 + 2340 0.67 0.886006
Target:  5'- aGUCgGCgGCGCGGCCgUCGAGCGcgGGc -3'
miRNA:   3'- -CGG-CG-CGCGCCGGaGGCUUGUuaUUu -5'
31065 3' -55.5 NC_006560.1 + 2571 0.68 0.814685
Target:  5'- gGUCGCGCGCggcgGGCCagCGGACGu---- -3'
miRNA:   3'- -CGGCGCGCG----CCGGagGCUUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 2904 0.74 0.515487
Target:  5'- cGCCGCGCGCGGCggUCCaGGCGGg--- -3'
miRNA:   3'- -CGGCGCGCGCCGg-AGGcUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 3095 0.68 0.82339
Target:  5'- gGCCgcaGCGCGCGGCCagCGAGg------ -3'
miRNA:   3'- -CGG---CGCGCGCCGGagGCUUguuauuu -5'
31065 3' -55.5 NC_006560.1 + 3278 0.66 0.917894
Target:  5'- cGCCGCGgGggucgGGCCcgCCGGGCGGg--- -3'
miRNA:   3'- -CGGCGCgCg----CCGGa-GGCUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 3788 0.76 0.412388
Target:  5'- cGgCGCGCGCGGCCgccagcCCGGGCAc---- -3'
miRNA:   3'- -CgGCGCGCGCCGGa-----GGCUUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 5180 0.67 0.878925
Target:  5'- gGCCGCGgcgacgGCGGCC-CCGAcgGCGGg--- -3'
miRNA:   3'- -CGGCGCg-----CGCCGGaGGCU--UGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 5311 0.68 0.840259
Target:  5'- cGCCGCGUgcgacggcgGCGGCCccUCCGggUc----- -3'
miRNA:   3'- -CGGCGCG---------CGCCGG--AGGCuuGuuauuu -5'
31065 3' -55.5 NC_006560.1 + 5457 0.67 0.856354
Target:  5'- cGCCGCccggggGCGCcgGGgCUCCGAGCGcgGu- -3'
miRNA:   3'- -CGGCG------CGCG--CCgGAGGCUUGUuaUuu -5'
31065 3' -55.5 NC_006560.1 + 6412 0.68 0.840259
Target:  5'- gGCgGCGcCGCGGCCggcccgCCGcACAAc--- -3'
miRNA:   3'- -CGgCGC-GCGCCGGa-----GGCuUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 7185 0.72 0.5965
Target:  5'- cCCGCGggccCGCGGCC-CCGGACA-UAAAg -3'
miRNA:   3'- cGGCGC----GCGCCGGaGGCUUGUuAUUU- -5'
31065 3' -55.5 NC_006560.1 + 11368 0.73 0.555565
Target:  5'- gGCCGgGUGCGGCCggcgCCGAcgACAc---- -3'
miRNA:   3'- -CGGCgCGCGCCGGa---GGCU--UGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 12413 0.79 0.280727
Target:  5'- cCCGCGCGCGGCCgaCGAACGggGAAc -3'
miRNA:   3'- cGGCGCGCGCCGGagGCUUGUuaUUU- -5'
31065 3' -55.5 NC_006560.1 + 12554 0.67 0.864094
Target:  5'- cGCCGCGCcgucGgGGUCUCguCGAGCAGc--- -3'
miRNA:   3'- -CGGCGCG----CgCCGGAG--GCUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 13811 0.67 0.848407
Target:  5'- gGCCGCGC-CGGCUUUuaaaGGACAAa--- -3'
miRNA:   3'- -CGGCGCGcGCCGGAGg---CUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 14633 0.67 0.886006
Target:  5'- cCCGCGgGCGGCacggCCGcaacaccauGACGGUGAu -3'
miRNA:   3'- cGGCGCgCGCCGga--GGC---------UUGUUAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.