miRNA display CGI


Results 1 - 20 of 721 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31066 3' -70.1 NC_006560.1 + 70700 1.08 0.00024
Target:  5'- cGCCCGCGCCGCCACGGGCCCCCGGCGc -3'
miRNA:   3'- -CGGGCGCGGCGGUGCCCGGGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 118055 0.87 0.010181
Target:  5'- gGCCCgGCGCCGCCGCGGGCgCCCCcgccgagcucgcGGCGg -3'
miRNA:   3'- -CGGG-CGCGGCGGUGCCCG-GGGG------------CCGC- -5'
31066 3' -70.1 NC_006560.1 + 17875 0.86 0.012441
Target:  5'- cGCgCGCGCCaGCCAgCGGGCgCCCCGGCGg -3'
miRNA:   3'- -CGgGCGCGG-CGGU-GCCCG-GGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 125862 0.85 0.013751
Target:  5'- cCCCGCGCC-CCGCGGGCCCCCcgucuaggGGCGa -3'
miRNA:   3'- cGGGCGCGGcGGUGCCCGGGGG--------CCGC- -5'
31066 3' -70.1 NC_006560.1 + 11916 0.83 0.020004
Target:  5'- cGUCCGCGaaGCCGCGGGCCCgcaggaggggCCGGCGg -3'
miRNA:   3'- -CGGGCGCggCGGUGCCCGGG----------GGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 79497 0.83 0.020509
Target:  5'- cGCCCGCGCCGCCGC--GCCgCCCGGCc -3'
miRNA:   3'- -CGGGCGCGGCGGUGccCGG-GGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 23954 0.82 0.023817
Target:  5'- cGCCCGCGcCCGCCGCccGCCCgCCGGCGc -3'
miRNA:   3'- -CGGGCGC-GGCGGUGccCGGG-GGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 143053 0.82 0.023817
Target:  5'- cGCCCG-GCCGCCGCGcGUCCCCGGUGc -3'
miRNA:   3'- -CGGGCgCGGCGGUGCcCGGGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 144997 0.81 0.026309
Target:  5'- gGCCCGCG-CGCCcucggGCGGaGCCCCCGGCc -3'
miRNA:   3'- -CGGGCGCgGCGG-----UGCC-CGGGGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 207 0.81 0.026971
Target:  5'- cGCgCGCGCCGCCGCGGGagggCCCGGCc -3'
miRNA:   3'- -CGgGCGCGGCGGUGCCCgg--GGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 150536 0.81 0.026971
Target:  5'- cGCgCGCGCCGCCGCGGGagggCCCGGCc -3'
miRNA:   3'- -CGgGCGCGGCGGUGCCCgg--GGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 150301 0.81 0.026971
Target:  5'- cGCgCGCGCCGCCGCGGGagggCCCGGCc -3'
miRNA:   3'- -CGgGCGCGGCGGUGCCCgg--GGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 50174 0.81 0.028345
Target:  5'- cCCCGCGCCGCCGuCGGGCguccacggCCCCGGaCGc -3'
miRNA:   3'- cGGGCGCGGCGGU-GCCCG--------GGGGCC-GC- -5'
31066 3' -70.1 NC_006560.1 + 5379 0.8 0.03372
Target:  5'- aGCCCGCGCCGCCgaGCGGaGCgCgCGGCa -3'
miRNA:   3'- -CGGGCGCGGCGG--UGCC-CGgGgGCCGc -5'
31066 3' -70.1 NC_006560.1 + 22619 0.8 0.03372
Target:  5'- cGCgCCGcCGCCGCCGCGGGCCgCCGcCGa -3'
miRNA:   3'- -CG-GGC-GCGGCGGUGCCCGGgGGCcGC- -5'
31066 3' -70.1 NC_006560.1 + 27406 0.8 0.03632
Target:  5'- uCCCGCggcgGCgCGCgCGCGGGCCUCCGGCGu -3'
miRNA:   3'- cGGGCG----CG-GCG-GUGCCCGGGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 67511 0.79 0.037229
Target:  5'- gGCCCGCGCCGcCCACGGcacccaagCCCCGGCc -3'
miRNA:   3'- -CGGGCGCGGC-GGUGCCcg------GGGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 23336 0.79 0.038161
Target:  5'- gGCgCCGCGCCGCCGCcccGGgacgccgccgccGCCCCCGGCc -3'
miRNA:   3'- -CG-GGCGCGGCGGUG---CC------------CGGGGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 67084 0.79 0.038161
Target:  5'- uGCCCGCGgCGCCagagagcgcggGCGGaGCCCCCugGGCGg -3'
miRNA:   3'- -CGGGCGCgGCGG-----------UGCC-CGGGGG--CCGC- -5'
31066 3' -70.1 NC_006560.1 + 70346 0.79 0.038161
Target:  5'- gGCCCcCGaCCGCCugGGGCCCUgGGCc -3'
miRNA:   3'- -CGGGcGC-GGCGGugCCCGGGGgCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.